Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 FAM207CP-201ENST00000443486 507 ntBASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 AC097493.3-201ENST00000509725 367 ntBASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 BAD-207ENST00000544785 525 ntTSL 3 BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 AC092580.3-201ENST00000430932 139 ntBASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 OR8S1-201ENST00000310194 1080 ntBASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 AC140658.5-201ENST00000438532 169 ntBASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 AC063926.2-201ENST00000623766 1308 ntBASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 BSG-214ENST00000614867 960 ntTSL 3 BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 WASH6P-202ENST00000359512 1437 ntBASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 AC009477.1-201ENST00000452936 217 ntBASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 SPDYE22P-201ENST00000582158 798 ntBASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC11.62□□□□□ -0.55
VPS13DQ5THJ4 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 AC107890.1-201ENST00000422478 521 ntBASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 AL671277.1-201ENST00000429656 993 ntBASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 IGHV3-52-201ENST00000519770 353 ntBASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 RARRES2P8-201ENST00000566335 367 ntBASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 LINC02560-201ENST00000596379 459 ntBASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 PODN-203ENST00000395871 2744 ntTSL 5 BASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 AP3S2-216ENST00000617003 1561 ntBASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 AL138828.2-201ENST00000615812 383 ntBASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 TNXA-203ENST00000507684 2038 ntBASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
VPS13DQ5THJ4 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC11.61□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms