Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC20.43■□□□□ 0.86
MRE11P49959 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MRE11P49959 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC20.43■□□□□ 0.86
MRE11P49959 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC20.43■□□□□ 0.86
MRE11P49959 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
MRE11P49959 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
MRE11P49959 SAPCD2P2-201ENST00000431719 1174 ntBASIC20.43■□□□□ 0.86
MRE11P49959 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC20.43■□□□□ 0.86
MRE11P49959 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC20.43■□□□□ 0.86
MRE11P49959 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
MRE11P49959 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
MRE11P49959 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.43■□□□□ 0.86
MRE11P49959 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
MRE11P49959 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MRE11P49959 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MRE11P49959 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
MRE11P49959 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC20.43■□□□□ 0.86
MRE11P49959 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC20.43■□□□□ 0.86
MRE11P49959 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
MRE11P49959 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MRE11P49959 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MRE11P49959 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
MRE11P49959 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC20.43■□□□□ 0.86
MRE11P49959 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
MRE11P49959 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
MRE11P49959 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC20.42■□□□□ 0.86
MRE11P49959 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
MRE11P49959 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
MRE11P49959 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
MRE11P49959 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
MRE11P49959 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
MRE11P49959 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC20.42■□□□□ 0.86
MRE11P49959 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
MRE11P49959 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
MRE11P49959 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
MRE11P49959 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.42■□□□□ 0.86
MRE11P49959 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.42■□□□□ 0.86
MRE11P49959 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
MRE11P49959 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC20.42■□□□□ 0.86
MRE11P49959 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC20.42■□□□□ 0.86
MRE11P49959 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC20.42■□□□□ 0.86
MRE11P49959 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
MRE11P49959 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.42■□□□□ 0.86
MRE11P49959 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
MRE11P49959 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
MRE11P49959 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC20.41■□□□□ 0.86
MRE11P49959 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC20.41■□□□□ 0.86
MRE11P49959 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MRE11P49959 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MRE11P49959 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC20.41■□□□□ 0.86
MRE11P49959 CYP2T1P-202ENST00000641596 2535 ntBASIC20.41■□□□□ 0.86
MRE11P49959 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MRE11P49959 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC20.41■□□□□ 0.86
MRE11P49959 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MRE11P49959 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.41■□□□□ 0.86
MRE11P49959 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
MRE11P49959 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
MRE11P49959 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC20.41■□□□□ 0.86
MRE11P49959 FDX1P1-201ENST00000449115 551 ntBASIC20.41■□□□□ 0.86
MRE11P49959 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
MRE11P49959 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.41■□□□□ 0.86
MRE11P49959 AC073195.1-201ENST00000607241 877 ntBASIC20.41■□□□□ 0.86
MRE11P49959 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
MRE11P49959 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
MRE11P49959 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC20.41■□□□□ 0.86
MRE11P49959 KRT8P11-201ENST00000409686 1436 ntBASIC20.41■□□□□ 0.86
MRE11P49959 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC20.41■□□□□ 0.86
MRE11P49959 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
MRE11P49959 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
MRE11P49959 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MRE11P49959 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
MRE11P49959 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
MRE11P49959 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC20.4■□□□□ 0.86
MRE11P49959 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC20.4■□□□□ 0.86
MRE11P49959 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
MRE11P49959 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
MRE11P49959 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC20.4■□□□□ 0.86
MRE11P49959 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
MRE11P49959 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC20.4■□□□□ 0.86
MRE11P49959 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
MRE11P49959 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
MRE11P49959 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
MRE11P49959 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
MRE11P49959 PCED1CP-201ENST00000419887 785 ntBASIC20.4■□□□□ 0.86
MRE11P49959 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC20.4■□□□□ 0.86
MRE11P49959 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
MRE11P49959 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
MRE11P49959 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
MRE11P49959 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC20.4■□□□□ 0.86
MRE11P49959 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
MRE11P49959 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC20.4■□□□□ 0.86
MRE11P49959 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC20.4■□□□□ 0.86
MRE11P49959 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC20.4■□□□□ 0.86
MRE11P49959 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
MRE11P49959 AC005915.1-201ENST00000624912 2018 ntBASIC20.4■□□□□ 0.86
MRE11P49959 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC20.4■□□□□ 0.86
MRE11P49959 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC20.4■□□□□ 0.86
MRE11P49959 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
MRE11P49959 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
MRE11P49959 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms