Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AC006058.4-201ENST00000624016 1670 ntBASIC17.53■□□□□ 0.4
SHOX2O60902 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC17.53■□□□□ 0.4
SHOX2O60902 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
SHOX2O60902 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
SHOX2O60902 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC17.53■□□□□ 0.4
SHOX2O60902 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
SHOX2O60902 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC17.53■□□□□ 0.4
SHOX2O60902 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC17.53■□□□□ 0.4
SHOX2O60902 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
SHOX2O60902 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SHOX2O60902 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC17.53■□□□□ 0.4
SHOX2O60902 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC17.53■□□□□ 0.4
SHOX2O60902 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHOX2O60902 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHOX2O60902 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHOX2O60902 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHOX2O60902 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SHOX2O60902 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SHOX2O60902 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.52■□□□□ 0.4
SHOX2O60902 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC17.52■□□□□ 0.4
SHOX2O60902 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SHOX2O60902 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
SHOX2O60902 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
SHOX2O60902 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC17.52■□□□□ 0.4
SHOX2O60902 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
SHOX2O60902 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SHOX2O60902 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC17.52■□□□□ 0.4
SHOX2O60902 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC17.52■□□□□ 0.4
SHOX2O60902 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SHOX2O60902 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC17.52■□□□□ 0.4
SHOX2O60902 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SHOX2O60902 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SHOX2O60902 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SHOX2O60902 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC17.52■□□□□ 0.4
SHOX2O60902 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
SHOX2O60902 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC17.52■□□□□ 0.4
SHOX2O60902 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC17.52■□□□□ 0.4
SHOX2O60902 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC17.52■□□□□ 0.4
SHOX2O60902 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC17.52■□□□□ 0.4
SHOX2O60902 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
SHOX2O60902 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
SHOX2O60902 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
SHOX2O60902 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SHOX2O60902 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SHOX2O60902 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
SHOX2O60902 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SHOX2O60902 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC17.52■□□□□ 0.39
SHOX2O60902 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.52■□□□□ 0.39
SHOX2O60902 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
SHOX2O60902 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
SHOX2O60902 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SHOX2O60902 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
SHOX2O60902 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
SHOX2O60902 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
SHOX2O60902 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
SHOX2O60902 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
SHOX2O60902 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SHOX2O60902 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SHOX2O60902 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
SHOX2O60902 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.51■□□□□ 0.39
SHOX2O60902 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SHOX2O60902 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SHOX2O60902 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SHOX2O60902 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SHOX2O60902 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC17.51■□□□□ 0.39
SHOX2O60902 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
SHOX2O60902 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC17.51■□□□□ 0.39
SHOX2O60902 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC17.51■□□□□ 0.39
SHOX2O60902 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SHOX2O60902 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC17.51■□□□□ 0.39
SHOX2O60902 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC17.51■□□□□ 0.39
SHOX2O60902 AC009065.1-201ENST00000564055 1225 ntBASIC17.51■□□□□ 0.39
SHOX2O60902 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SHOX2O60902 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC17.51■□□□□ 0.39
SHOX2O60902 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC17.51■□□□□ 0.39
SHOX2O60902 AC104771.1-201ENST00000603335 964 ntBASIC17.51■□□□□ 0.39
SHOX2O60902 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC17.51■□□□□ 0.39
SHOX2O60902 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.51■□□□□ 0.39
SHOX2O60902 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SHOX2O60902 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SHOX2O60902 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SHOX2O60902 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SHOX2O60902 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
SHOX2O60902 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC17.51■□□□□ 0.39
SHOX2O60902 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SHOX2O60902 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC17.51■□□□□ 0.39
SHOX2O60902 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
SHOX2O60902 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SHOX2O60902 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
SHOX2O60902 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SHOX2O60902 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SHOX2O60902 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.5■□□□□ 0.39
SHOX2O60902 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SHOX2O60902 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC17.5■□□□□ 0.39
SHOX2O60902 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SHOX2O60902 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC17.5■□□□□ 0.39
SHOX2O60902 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SHOX2O60902 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SHOX2O60902 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC17.5■□□□□ 0.39
SHOX2O60902 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms