Protein–RNA interactions for Protein: Q9Y5F2

PCDHB11, Protocadherin beta-11, humanhuman

Predictions only

Length 797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB11Q9Y5F2 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
PCDHB11Q9Y5F2 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC23.85■■□□□ 1.41
PCDHB11Q9Y5F2 RARRES2P1-201ENST00000474487 481 ntBASIC23.85■■□□□ 1.41
PCDHB11Q9Y5F2 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC23.85■■□□□ 1.41
PCDHB11Q9Y5F2 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC23.85■■□□□ 1.41
PCDHB11Q9Y5F2 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC23.85■■□□□ 1.41
PCDHB11Q9Y5F2 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PCDHB11Q9Y5F2 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PCDHB11Q9Y5F2 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC23.84■■□□□ 1.41
PCDHB11Q9Y5F2 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC23.83■■□□□ 1.41
PCDHB11Q9Y5F2 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
PCDHB11Q9Y5F2 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
PCDHB11Q9Y5F2 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC23.83■■□□□ 1.41
PCDHB11Q9Y5F2 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
PCDHB11Q9Y5F2 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC23.83■■□□□ 1.41
PCDHB11Q9Y5F2 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
PCDHB11Q9Y5F2 AC007029.1-201ENST00000604183 313 ntBASIC23.83■■□□□ 1.41
PCDHB11Q9Y5F2 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
PCDHB11Q9Y5F2 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
PCDHB11Q9Y5F2 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
PCDHB11Q9Y5F2 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC23.82■■□□□ 1.4
PCDHB11Q9Y5F2 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
PCDHB11Q9Y5F2 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC23.81■■□□□ 1.4
PCDHB11Q9Y5F2 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PCDHB11Q9Y5F2 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC23.81■■□□□ 1.4
PCDHB11Q9Y5F2 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC23.81■■□□□ 1.4
PCDHB11Q9Y5F2 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC23.81■■□□□ 1.4
PCDHB11Q9Y5F2 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC23.81■■□□□ 1.4
PCDHB11Q9Y5F2 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
PCDHB11Q9Y5F2 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PCDHB11Q9Y5F2 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
PCDHB11Q9Y5F2 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
PCDHB11Q9Y5F2 SMPD5-203ENST00000639008 1464 ntBASIC23.8■■□□□ 1.4
PCDHB11Q9Y5F2 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
PCDHB11Q9Y5F2 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC23.79■■□□□ 1.4
PCDHB11Q9Y5F2 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PCDHB11Q9Y5F2 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC23.79■■□□□ 1.4
PCDHB11Q9Y5F2 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
PCDHB11Q9Y5F2 AC133552.2-201ENST00000619106 1032 ntBASIC23.78■■□□□ 1.4
PCDHB11Q9Y5F2 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
PCDHB11Q9Y5F2 PKM-203ENST00000389093 2279 ntTSL 5 BASIC23.78■■□□□ 1.4
PCDHB11Q9Y5F2 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC23.77■■□□□ 1.4
PCDHB11Q9Y5F2 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
PCDHB11Q9Y5F2 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCDHB11Q9Y5F2 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCDHB11Q9Y5F2 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
PCDHB11Q9Y5F2 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
PCDHB11Q9Y5F2 AC129492.7-201ENST00000622992 756 ntBASIC23.76■■□□□ 1.39
PCDHB11Q9Y5F2 AL359504.2-201ENST00000605506 1601 ntBASIC23.76■■□□□ 1.39
PCDHB11Q9Y5F2 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCDHB11Q9Y5F2 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
PCDHB11Q9Y5F2 AP004609.3-201ENST00000610705 1884 ntBASIC23.75■■□□□ 1.39
PCDHB11Q9Y5F2 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
PCDHB11Q9Y5F2 DUX4L18-201ENST00000553347 1267 ntBASIC23.75■■□□□ 1.39
PCDHB11Q9Y5F2 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
PCDHB11Q9Y5F2 AC142472.1-201ENST00000612013 1741 ntBASIC23.75■■□□□ 1.39
PCDHB11Q9Y5F2 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PCDHB11Q9Y5F2 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PCDHB11Q9Y5F2 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
PCDHB11Q9Y5F2 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC23.74■■□□□ 1.39
PCDHB11Q9Y5F2 AL592293.1-201ENST00000502889 1188 ntBASIC23.74■■□□□ 1.39
PCDHB11Q9Y5F2 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
PCDHB11Q9Y5F2 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
PCDHB11Q9Y5F2 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
PCDHB11Q9Y5F2 SHF-207ENST00000560540 2062 ntTSL 5 BASIC23.73■■□□□ 1.39
PCDHB11Q9Y5F2 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
PCDHB11Q9Y5F2 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
PCDHB11Q9Y5F2 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
PCDHB11Q9Y5F2 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC23.73■■□□□ 1.39
PCDHB11Q9Y5F2 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PCDHB11Q9Y5F2 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC23.72■■□□□ 1.39
PCDHB11Q9Y5F2 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC23.72■■□□□ 1.39
PCDHB11Q9Y5F2 HES4-204ENST00000484667 667 ntTSL 3 BASIC23.72■■□□□ 1.39
PCDHB11Q9Y5F2 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PCDHB11Q9Y5F2 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC23.72■■□□□ 1.39
PCDHB11Q9Y5F2 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PCDHB11Q9Y5F2 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC23.71■■□□□ 1.39
PCDHB11Q9Y5F2 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
PCDHB11Q9Y5F2 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC23.71■■□□□ 1.39
PCDHB11Q9Y5F2 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC23.71■■□□□ 1.39
PCDHB11Q9Y5F2 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC23.71■■□□□ 1.39
PCDHB11Q9Y5F2 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC23.71■■□□□ 1.39
PCDHB11Q9Y5F2 AC009831.1-201ENST00000580420 1582 ntBASIC23.7■■□□□ 1.38
PCDHB11Q9Y5F2 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
PCDHB11Q9Y5F2 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC23.7■■□□□ 1.38
PCDHB11Q9Y5F2 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
PCDHB11Q9Y5F2 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC23.7■■□□□ 1.38
PCDHB11Q9Y5F2 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
PCDHB11Q9Y5F2 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
PCDHB11Q9Y5F2 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC23.69■■□□□ 1.38
PCDHB11Q9Y5F2 AC025884.2-201ENST00000553429 711 ntBASIC23.69■■□□□ 1.38
PCDHB11Q9Y5F2 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
PCDHB11Q9Y5F2 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
PCDHB11Q9Y5F2 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
PCDHB11Q9Y5F2 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
PCDHB11Q9Y5F2 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
PCDHB11Q9Y5F2 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
PCDHB11Q9Y5F2 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
PCDHB11Q9Y5F2 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
PCDHB11Q9Y5F2 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms