Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC21.79■■□□□ 1.08
CLCF1Q9UBD9 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
CLCF1Q9UBD9 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC21.79■■□□□ 1.08
CLCF1Q9UBD9 SHF-208ENST00000560734 1731 ntTSL 3 BASIC21.78■■□□□ 1.08
CLCF1Q9UBD9 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
CLCF1Q9UBD9 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CLCF1Q9UBD9 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC21.78■■□□□ 1.08
CLCF1Q9UBD9 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
CLCF1Q9UBD9 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CLCF1Q9UBD9 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CLCF1Q9UBD9 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC21.77■■□□□ 1.08
CLCF1Q9UBD9 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC21.77■■□□□ 1.08
CLCF1Q9UBD9 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CLCF1Q9UBD9 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
CLCF1Q9UBD9 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC21.76■■□□□ 1.07
CLCF1Q9UBD9 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CLCF1Q9UBD9 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CLCF1Q9UBD9 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
CLCF1Q9UBD9 AC142472.1-201ENST00000612013 1741 ntBASIC21.75■■□□□ 1.07
CLCF1Q9UBD9 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC21.75■■□□□ 1.07
CLCF1Q9UBD9 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC21.75■■□□□ 1.07
CLCF1Q9UBD9 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC21.75■■□□□ 1.07
CLCF1Q9UBD9 MIR6765-201ENST00000614092 87 ntBASIC21.75■■□□□ 1.07
CLCF1Q9UBD9 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC21.75■■□□□ 1.07
CLCF1Q9UBD9 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC21.75■■□□□ 1.07
CLCF1Q9UBD9 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CLCF1Q9UBD9 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
CLCF1Q9UBD9 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CLCF1Q9UBD9 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
CLCF1Q9UBD9 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CLCF1Q9UBD9 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CLCF1Q9UBD9 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CLCF1Q9UBD9 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC21.74■■□□□ 1.07
CLCF1Q9UBD9 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CLCF1Q9UBD9 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CLCF1Q9UBD9 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC21.74■■□□□ 1.07
CLCF1Q9UBD9 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC21.74■■□□□ 1.07
CLCF1Q9UBD9 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CLCF1Q9UBD9 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CLCF1Q9UBD9 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CLCF1Q9UBD9 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC21.73■■□□□ 1.07
CLCF1Q9UBD9 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
CLCF1Q9UBD9 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CLCF1Q9UBD9 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC21.72■■□□□ 1.07
CLCF1Q9UBD9 AC018755.3-202ENST00000596210 929 ntBASIC21.72■■□□□ 1.07
CLCF1Q9UBD9 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
CLCF1Q9UBD9 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CLCF1Q9UBD9 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CLCF1Q9UBD9 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
CLCF1Q9UBD9 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC21.71■■□□□ 1.07
CLCF1Q9UBD9 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC21.71■■□□□ 1.07
CLCF1Q9UBD9 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CLCF1Q9UBD9 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC21.71■■□□□ 1.07
CLCF1Q9UBD9 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CLCF1Q9UBD9 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC21.7■■□□□ 1.07
CLCF1Q9UBD9 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CLCF1Q9UBD9 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CLCF1Q9UBD9 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC21.7■■□□□ 1.06
CLCF1Q9UBD9 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CLCF1Q9UBD9 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC21.69■■□□□ 1.06
CLCF1Q9UBD9 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CLCF1Q9UBD9 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC21.69■■□□□ 1.06
CLCF1Q9UBD9 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CLCF1Q9UBD9 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CLCF1Q9UBD9 AP004609.3-201ENST00000610705 1884 ntBASIC21.68■■□□□ 1.06
CLCF1Q9UBD9 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
CLCF1Q9UBD9 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
CLCF1Q9UBD9 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLCF1Q9UBD9 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CLCF1Q9UBD9 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLCF1Q9UBD9 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLCF1Q9UBD9 IDNK-203ENST00000405990 629 ntTSL 2 BASIC21.67■■□□□ 1.06
CLCF1Q9UBD9 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
CLCF1Q9UBD9 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
CLCF1Q9UBD9 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC21.66■■□□□ 1.06
CLCF1Q9UBD9 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC21.66■■□□□ 1.06
CLCF1Q9UBD9 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CLCF1Q9UBD9 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLCF1Q9UBD9 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLCF1Q9UBD9 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLCF1Q9UBD9 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CLCF1Q9UBD9 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
CLCF1Q9UBD9 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC21.65■■□□□ 1.06
CLCF1Q9UBD9 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLCF1Q9UBD9 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC21.65■■□□□ 1.06
CLCF1Q9UBD9 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CLCF1Q9UBD9 RARRES2P1-201ENST00000474487 481 ntBASIC21.64■■□□□ 1.05
CLCF1Q9UBD9 AC074183.2-201ENST00000623112 922 ntBASIC21.64■■□□□ 1.05
CLCF1Q9UBD9 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLCF1Q9UBD9 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLCF1Q9UBD9 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC21.63■■□□□ 1.05
CLCF1Q9UBD9 HYI-210ENST00000486909 905 ntTSL 5 BASIC21.63■■□□□ 1.05
CLCF1Q9UBD9 AC139795.1-202ENST00000500444 432 ntBASIC21.63■■□□□ 1.05
CLCF1Q9UBD9 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC21.63■■□□□ 1.05
CLCF1Q9UBD9 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC21.63■■□□□ 1.05
CLCF1Q9UBD9 BHLHE23-202ENST00000612929 1109 ntBASIC21.63■■□□□ 1.05
CLCF1Q9UBD9 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC21.63■■□□□ 1.05
CLCF1Q9UBD9 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC21.63■■□□□ 1.05
CLCF1Q9UBD9 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLCF1Q9UBD9 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 10.4 ms