Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 SUGP1-201ENST00000247001 2423 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.216e-6■■■■■ 27.5
DDX55Q8NHQ9 MAN1B1-205ENST00000480100 3483 ntTSL 213.45□□□□□ -0.268e-8■■■■■ 27.5
DDX55Q8NHQ9 URM1-201ENST00000372847 753 ntTSL 3 BASIC13.05□□□□□ -0.326e-6■■■■■ 27.5
DDX55Q8NHQ9 RAN-207ENST00000536606 572 ntTSL 312.97□□□□□ -0.332e-7■■■■■ 27.5
DDX55Q8NHQ9 STARD3-224ENST00000583639 452 ntTSL 312.85□□□□□ -0.352e-7■■■■■ 27.5
DDX55Q8NHQ9 GRAMD1A-204ENST00000594597 567 ntTSL 412.68□□□□□ -0.382e-6■■■■■ 27.5
DDX55Q8NHQ9 AC068533.4-201ENST00000450043 922 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.412e-7■■■■■ 27.5
DDX55Q8NHQ9 MAN1B1-211ENST00000540391 3940 ntTSL 211.78□□□□□ -0.528e-8■■■■■ 27.5
DDX55Q8NHQ9 MAN1B1-206ENST00000535028 3886 ntTSL 211.76□□□□□ -0.538e-8■■■■■ 27.5
DDX55Q8NHQ9 RAN-204ENST00000464211 562 ntTSL 511.72□□□□□ -0.532e-7■■■■■ 27.5
DDX55Q8NHQ9 RAN-201ENST00000392367 780 ntTSL 5 BASIC10.72□□□□□ -0.692e-7■■■■■ 27.5
DDX55Q8NHQ9 RAN-211ENST00000541679 572 ntTSL 5 BASIC10.31□□□□□ -0.769e-8■■■■■ 27.5
DDX55Q8NHQ9 ANP32A-206ENST00000483551 3711 ntTSL 59.6□□□□□ -0.876e-6■■■■■ 27.5
DDX55Q8NHQ9 RAN-203ENST00000448750 2455 ntTSL 28.17□□□□□ -1.19e-8■■■■■ 27.5
DDX55Q8NHQ9 RAN-206ENST00000535090 657 ntTSL 55.36□□□□□ -1.552e-7■■■■■ 27.5
DDX55Q8NHQ9 CHUK-204ENST00000590930 4845 ntTSL 1 (best)4.46□□□□□ -1.76e-6■■■■■ 27.5
DDX55Q8NHQ9 PRPF39-206ENST00000554429 2977 ntTSL 53.15□□□□□ -1.916e-6■■■■■ 27.5
DDX55Q8NHQ9 PRPF39-205ENST00000554081 3223 ntTSL 52.93□□□□□ -1.946e-6■■■■■ 27.5
DDX55Q8NHQ9 PRPF39-207ENST00000554439 2982 ntTSL 52.61□□□□□ -1.996e-6■■■■■ 27.5
DDX55Q8NHQ9 PRPF39-208ENST00000554785 2121 ntTSL 21.94□□□□□ -2.16e-6■■■■■ 27.5
DDX55Q8NHQ9 AAMP-210ENST00000494720 1134 ntTSL 227.64■■■□□ 2.021e-11■■■■■ 27.5
DDX55Q8NHQ9 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.421e-11■■■■■ 27.5
DDX55Q8NHQ9 AAMP-208ENST00000475678 2270 ntTSL 217.36■□□□□ 0.371e-11■■■■■ 27.5
DDX55Q8NHQ9 AAMP-209ENST00000489767 1833 ntTSL 517.21■□□□□ 0.351e-11■■■■■ 27.5
DDX55Q8NHQ9 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC17.17■□□□□ 0.341e-11■■■■■ 27.5
DDX55Q8NHQ9 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.181e-11■■■■■ 27.5
DDX55Q8NHQ9 MCM2-201ENST00000265056 3622 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.114e-8■■■■■ 27.5
DDX55Q8NHQ9 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC27.8■■■□□ 2.044e-6■■■■■ 27.4
DDX55Q8NHQ9 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC27.65■■■□□ 2.024e-6■■■■■ 27.4
DDX55Q8NHQ9 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC27.46■■□□□ 1.994e-6■■■■■ 27.4
DDX55Q8NHQ9 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.794e-6■■■■■ 27.4
DDX55Q8NHQ9 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC25.92■■□□□ 1.744e-6■■■■■ 27.4
DDX55Q8NHQ9 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC24.84■■□□□ 1.574e-6■■■■■ 27.4
DDX55Q8NHQ9 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC24.71■■□□□ 1.554e-6■■■■■ 27.4
DDX55Q8NHQ9 NOC2L-204ENST00000483767 1611 ntTSL 221.8■■□□□ 1.082e-7■■■■■ 27.4
DDX55Q8NHQ9 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.894e-6■■■■■ 27.4
DDX55Q8NHQ9 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.794e-6■■■■■ 27.4
DDX55Q8NHQ9 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.775e-9■■■■■ 27.4
DDX55Q8NHQ9 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.754e-6■■■■■ 27.4
DDX55Q8NHQ9 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.744e-6■■■■■ 27.4
DDX55Q8NHQ9 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.734e-6■■■■■ 27.4
DDX55Q8NHQ9 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.695e-9■■■■■ 27.4
DDX55Q8NHQ9 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.654e-6■■■■■ 27.4
DDX55Q8NHQ9 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC18.76■□□□□ 0.594e-6■■■■■ 27.4
DDX55Q8NHQ9 HDHD3-203ENST00000485934 913 ntTSL 218.49■□□□□ 0.554e-6■■■■■ 27.4
DDX55Q8NHQ9 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.544e-6■■■■■ 27.4
DDX55Q8NHQ9 MAP4-201ENST00000335271 1564 ntAPPRIS ALT2 TSL 217.91■□□□□ 0.462e-11■■■■■ 27.4
DDX55Q8NHQ9 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.414e-6■■■■■ 27.4
DDX55Q8NHQ9 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.329e-12■■■■■ 27.4
DDX55Q8NHQ9 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC16.95■□□□□ 0.34e-6■■■■■ 27.4
DDX55Q8NHQ9 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.234e-6■■■■■ 27.4
DDX55Q8NHQ9 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.214e-6■■■■■ 27.4
DDX55Q8NHQ9 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.184e-6■■■■■ 27.4
DDX55Q8NHQ9 NUPR1-203ENST00000567646 598 ntTSL 315.52■□□□□ 0.084e-6■■■■■ 27.4
DDX55Q8NHQ9 MAP4-204ENST00000395734 5590 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.092e-8■■■■■ 27.4
DDX55Q8NHQ9 TOR1AIP1-212ENST00000606911 8704 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.24e-6■■■■■ 27.4
DDX55Q8NHQ9 CNDP2-202ENST00000324301 2349 ntTSL 1 (best) BASIC12.74□□□□□ -0.374e-6■■■■■ 27.4
DDX55Q8NHQ9 IQGAP3-201ENST00000361170 5988 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.383e-6■■■■■ 27.4
DDX55Q8NHQ9 IQGAP3-203ENST00000491900 5294 ntTSL 1 (best)12.52□□□□□ -0.43e-6■■■■■ 27.4
DDX55Q8NHQ9 CNDP2-226ENST00000584581 4523 ntTSL 212.46□□□□□ -0.414e-6■■■■■ 27.4
DDX55Q8NHQ9 CNDP2-209ENST00000579847 2653 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.424e-6■■■■■ 27.4
DDX55Q8NHQ9 PSMA5-204ENST00000490870 1667 ntTSL 1 (best)12.34□□□□□ -0.434e-6■■■■■ 27.4
DDX55Q8NHQ9 NUPR1-201ENST00000324873 5491 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.474e-6■■■■■ 27.4
DDX55Q8NHQ9 MAP4-208ENST00000429422 3724 ntTSL 1 (best)12□□□□□ -0.492e-8■■■■■ 27.4
DDX55Q8NHQ9 ACVR2B-201ENST00000352511 11821 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.53e-11■■■■■ 27.4
DDX55Q8NHQ9 CDHR2-206ENST00000510636 4509 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.514e-6■■■■■ 27.4
DDX55Q8NHQ9 CDHR2-203ENST00000506348 4005 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.554e-6■■■■■ 27.4
DDX55Q8NHQ9 CDHR2-201ENST00000261944 4068 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.564e-6■■■■■ 27.4
DDX55Q8NHQ9 MAP4-207ENST00000426837 8920 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.642e-8■■■■■ 27.4
DDX55Q8NHQ9 MAP4-205ENST00000420772 3478 ntAPPRIS ALT2 TSL 5 BASIC10.34□□□□□ -0.751e-11■■■■■ 27.4
DDX55Q8NHQ9 NUPR1-202ENST00000395641 550 ntTSL 2 BASIC10.05□□□□□ -0.84e-6■■■■■ 27.4
DDX55Q8NHQ9 CNDP2-208ENST00000579624 1176 ntTSL 59.91□□□□□ -0.824e-6■■■■■ 27.4
DDX55Q8NHQ9 GLG1-205ENST00000561942 674 ntTSL 29.01□□□□□ -0.974e-6■■■■■ 27.4
DDX55Q8NHQ9 AC106886.5-201ENST00000380361 11692 ntAPPRIS P1 TSL 2 BASIC8.7□□□□□ -1.024e-6■■■■■ 27.4
DDX55Q8NHQ9 IFRD1-210ENST00000462155 437 ntTSL 58.4□□□□□ -1.064e-6■■■■■ 27.4
DDX55Q8NHQ9 SLC35E1-201ENST00000409648 3691 ntTSL 28.11□□□□□ -1.114e-6■■■■■ 27.4
DDX55Q8NHQ9 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC6.71□□□□□ -1.344e-6■■■■■ 27.4
DDX55Q8NHQ9 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC6.33□□□□□ -1.44e-6■■■■■ 27.4
DDX55Q8NHQ9 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.414e-6■■■■■ 27.4
DDX55Q8NHQ9 SLC35E1-207ENST00000593812 924 ntTSL 56.01□□□□□ -1.454e-6■■■■■ 27.4
DDX55Q8NHQ9 IFRD1-215ENST00000489994 1721 ntTSL 1 (best)5.53□□□□□ -1.524e-6■■■■■ 27.4
DDX55Q8NHQ9 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.794e-6■■■■■ 27.4
DDX55Q8NHQ9 FXYD2-208ENST00000534383 991 ntTSL 322.08■■□□□ 1.133e-10■■■■■ 27.2
DDX55Q8NHQ9 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.363e-10■■■■■ 27.2
DDX55Q8NHQ9 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.343e-10■■■■■ 27.2
DDX55Q8NHQ9 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC16.74■□□□□ 0.273e-10■■■■■ 27.2
DDX55Q8NHQ9 FXYD2-202ENST00000292079 571 ntTSL 1 (best) BASIC15.87■□□□□ 0.133e-10■■■■■ 27.2
DDX55Q8NHQ9 FXYD2-201ENST00000260287 513 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.013e-10■■■■■ 27.2
DDX55Q8NHQ9 FXYD2-206ENST00000532119 562 ntAPPRIS P1 TSL 3 BASIC8.69□□□□□ -1.023e-10■■■■■ 27.2
DDX55Q8NHQ9 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.21e-8■■■■■ 27.2
DDX55Q8NHQ9 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC22.01■■□□□ 1.111e-24■■■■■ 27.2
DDX55Q8NHQ9 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC21.38■■□□□ 1.011e-24■■■■■ 27.2
DDX55Q8NHQ9 GLB1-203ENST00000399402 2512 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.081e-24■■■■■ 27.2
DDX55Q8NHQ9 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.54e-9■■■■■ 27.1
DDX55Q8NHQ9 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.342e-35■■■■■ 27
DDX55Q8NHQ9 GPCPD1-201ENST00000379019 5489 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.113e-10■■■■■ 27
DDX55Q8NHQ9 GPCPD1-205ENST00000481038 6649 ntTSL 25.18□□□□□ -1.583e-10■■■■■ 27
DDX55Q8NHQ9 GPCPD1-202ENST00000418646 4015 ntTSL 54.7□□□□□ -1.663e-10■■■■■ 27
DDX55Q8NHQ9 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.797e-7■■■■■ 26.8
DDX55Q8NHQ9 PLK1-202ENST00000562272 4135 ntTSL 212.5□□□□□ -0.417e-7■■■■■ 26.8
Retrieved 100 of 15,504 protein–RNA pairs in 286.9 ms