Protein–RNA interactions for Protein: Q8N4T4

ARHGEF39, Rho guanine nucleotide exchange factor 39, humanhuman

Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF39Q8N4T4 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
ARHGEF39Q8N4T4 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
ARHGEF39Q8N4T4 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC23.16■■□□□ 1.3
ARHGEF39Q8N4T4 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
ARHGEF39Q8N4T4 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
ARHGEF39Q8N4T4 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC23.15■■□□□ 1.3
ARHGEF39Q8N4T4 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC23.15■■□□□ 1.3
ARHGEF39Q8N4T4 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC23.15■■□□□ 1.3
ARHGEF39Q8N4T4 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC23.15■■□□□ 1.3
ARHGEF39Q8N4T4 AL592293.1-201ENST00000502889 1188 ntBASIC23.15■■□□□ 1.3
ARHGEF39Q8N4T4 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
ARHGEF39Q8N4T4 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
ARHGEF39Q8N4T4 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
ARHGEF39Q8N4T4 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
ARHGEF39Q8N4T4 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
ARHGEF39Q8N4T4 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.3
ARHGEF39Q8N4T4 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.3
ARHGEF39Q8N4T4 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
ARHGEF39Q8N4T4 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
ARHGEF39Q8N4T4 HES4-204ENST00000484667 667 ntTSL 3 BASIC23.14■■□□□ 1.29
ARHGEF39Q8N4T4 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC23.14■■□□□ 1.29
ARHGEF39Q8N4T4 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
ARHGEF39Q8N4T4 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
ARHGEF39Q8N4T4 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC23.13■■□□□ 1.29
ARHGEF39Q8N4T4 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
ARHGEF39Q8N4T4 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
ARHGEF39Q8N4T4 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
ARHGEF39Q8N4T4 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
ARHGEF39Q8N4T4 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
ARHGEF39Q8N4T4 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
ARHGEF39Q8N4T4 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC23.12■■□□□ 1.29
ARHGEF39Q8N4T4 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
ARHGEF39Q8N4T4 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
ARHGEF39Q8N4T4 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
ARHGEF39Q8N4T4 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC23.11■■□□□ 1.29
ARHGEF39Q8N4T4 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
ARHGEF39Q8N4T4 PKM-203ENST00000389093 2279 ntTSL 5 BASIC23.1■■□□□ 1.29
ARHGEF39Q8N4T4 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
ARHGEF39Q8N4T4 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
ARHGEF39Q8N4T4 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC23.1■■□□□ 1.29
ARHGEF39Q8N4T4 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
ARHGEF39Q8N4T4 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
ARHGEF39Q8N4T4 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
ARHGEF39Q8N4T4 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
ARHGEF39Q8N4T4 AC129492.7-201ENST00000622992 756 ntBASIC23.09■■□□□ 1.29
ARHGEF39Q8N4T4 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC23.09■■□□□ 1.29
ARHGEF39Q8N4T4 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
ARHGEF39Q8N4T4 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
ARHGEF39Q8N4T4 SPCS2P3-201ENST00000500401 656 ntBASIC23.08■■□□□ 1.29
ARHGEF39Q8N4T4 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.29
ARHGEF39Q8N4T4 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
ARHGEF39Q8N4T4 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC23.08■■□□□ 1.29
ARHGEF39Q8N4T4 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
ARHGEF39Q8N4T4 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC23.07■■□□□ 1.28
ARHGEF39Q8N4T4 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC23.07■■□□□ 1.28
ARHGEF39Q8N4T4 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
ARHGEF39Q8N4T4 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
ARHGEF39Q8N4T4 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
ARHGEF39Q8N4T4 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
ARHGEF39Q8N4T4 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
ARHGEF39Q8N4T4 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
ARHGEF39Q8N4T4 AC012354.3-201ENST00000623734 483 ntBASIC23.06■■□□□ 1.28
ARHGEF39Q8N4T4 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
ARHGEF39Q8N4T4 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
ARHGEF39Q8N4T4 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
ARHGEF39Q8N4T4 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
ARHGEF39Q8N4T4 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
ARHGEF39Q8N4T4 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC23.05■■□□□ 1.28
ARHGEF39Q8N4T4 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC23.05■■□□□ 1.28
ARHGEF39Q8N4T4 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
ARHGEF39Q8N4T4 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
ARHGEF39Q8N4T4 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC23.04■■□□□ 1.28
ARHGEF39Q8N4T4 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
ARHGEF39Q8N4T4 AC004987.1-201ENST00000428627 508 ntBASIC23.03■■□□□ 1.28
ARHGEF39Q8N4T4 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC23.03■■□□□ 1.28
ARHGEF39Q8N4T4 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC23.03■■□□□ 1.28
ARHGEF39Q8N4T4 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
ARHGEF39Q8N4T4 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
ARHGEF39Q8N4T4 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
ARHGEF39Q8N4T4 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
ARHGEF39Q8N4T4 DUX4L9-201ENST00000449051 1259 ntBASIC23.02■■□□□ 1.28
ARHGEF39Q8N4T4 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC23.02■■□□□ 1.28
ARHGEF39Q8N4T4 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
ARHGEF39Q8N4T4 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
ARHGEF39Q8N4T4 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
ARHGEF39Q8N4T4 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
ARHGEF39Q8N4T4 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
ARHGEF39Q8N4T4 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
ARHGEF39Q8N4T4 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC23.01■■□□□ 1.27
ARHGEF39Q8N4T4 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC23.01■■□□□ 1.27
ARHGEF39Q8N4T4 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
ARHGEF39Q8N4T4 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
ARHGEF39Q8N4T4 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
ARHGEF39Q8N4T4 ATP5G2P3-201ENST00000429083 425 ntBASIC23.01■■□□□ 1.27
ARHGEF39Q8N4T4 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC23.01■■□□□ 1.27
ARHGEF39Q8N4T4 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
ARHGEF39Q8N4T4 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
ARHGEF39Q8N4T4 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
ARHGEF39Q8N4T4 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC23.01■■□□□ 1.27
ARHGEF39Q8N4T4 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms