Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 MIR6765-201ENST00000614092 87 ntBASIC29.91■■■□□ 2.38
USP48Q86UV5 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC29.91■■■□□ 2.38
USP48Q86UV5 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
USP48Q86UV5 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
USP48Q86UV5 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC29.9■■■□□ 2.38
USP48Q86UV5 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
USP48Q86UV5 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
USP48Q86UV5 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC29.9■■■□□ 2.38
USP48Q86UV5 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
USP48Q86UV5 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC29.89■■■□□ 2.38
USP48Q86UV5 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC29.89■■■□□ 2.38
USP48Q86UV5 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC29.89■■■□□ 2.38
USP48Q86UV5 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC29.89■■■□□ 2.38
USP48Q86UV5 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC29.89■■■□□ 2.38
USP48Q86UV5 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
USP48Q86UV5 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC29.88■■■□□ 2.37
USP48Q86UV5 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC29.88■■■□□ 2.37
USP48Q86UV5 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC29.88■■■□□ 2.37
USP48Q86UV5 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC29.88■■■□□ 2.37
USP48Q86UV5 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC29.87■■■□□ 2.37
USP48Q86UV5 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
USP48Q86UV5 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC29.87■■■□□ 2.37
USP48Q86UV5 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC29.87■■■□□ 2.37
USP48Q86UV5 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC29.86■■■□□ 2.37
USP48Q86UV5 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC29.86■■■□□ 2.37
USP48Q86UV5 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC29.86■■■□□ 2.37
USP48Q86UV5 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC29.86■■■□□ 2.37
USP48Q86UV5 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC29.86■■■□□ 2.37
USP48Q86UV5 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
USP48Q86UV5 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC29.86■■■□□ 2.37
USP48Q86UV5 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC29.85■■■□□ 2.37
USP48Q86UV5 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
USP48Q86UV5 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
USP48Q86UV5 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC29.84■■■□□ 2.37
USP48Q86UV5 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC29.84■■■□□ 2.37
USP48Q86UV5 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC29.84■■■□□ 2.37
USP48Q86UV5 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
USP48Q86UV5 HYI-210ENST00000486909 905 ntTSL 5 BASIC29.84■■■□□ 2.37
USP48Q86UV5 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC29.84■■■□□ 2.37
USP48Q86UV5 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC29.84■■■□□ 2.37
USP48Q86UV5 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
USP48Q86UV5 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC29.83■■■□□ 2.37
USP48Q86UV5 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC29.83■■■□□ 2.37
USP48Q86UV5 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
USP48Q86UV5 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC29.83■■■□□ 2.37
USP48Q86UV5 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC29.83■■■□□ 2.37
USP48Q86UV5 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
USP48Q86UV5 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
USP48Q86UV5 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC29.82■■■□□ 2.36
USP48Q86UV5 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
USP48Q86UV5 AC018755.3-202ENST00000596210 929 ntBASIC29.82■■■□□ 2.36
USP48Q86UV5 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC29.82■■■□□ 2.36
USP48Q86UV5 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC29.82■■■□□ 2.36
USP48Q86UV5 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC29.82■■■□□ 2.36
USP48Q86UV5 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
USP48Q86UV5 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
USP48Q86UV5 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
USP48Q86UV5 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC29.81■■■□□ 2.36
USP48Q86UV5 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC29.81■■■□□ 2.36
USP48Q86UV5 MIR4508-201ENST00000584178 70 ntBASIC29.81■■■□□ 2.36
USP48Q86UV5 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC29.81■■■□□ 2.36
USP48Q86UV5 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
USP48Q86UV5 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
USP48Q86UV5 AP004833.2-201ENST00000532228 1454 ntBASIC29.8■■■□□ 2.36
USP48Q86UV5 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
USP48Q86UV5 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
USP48Q86UV5 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
USP48Q86UV5 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC29.8■■■□□ 2.36
USP48Q86UV5 AL356441.2-201ENST00000443009 864 ntBASIC29.8■■■□□ 2.36
USP48Q86UV5 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC29.8■■■□□ 2.36
USP48Q86UV5 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC29.8■■■□□ 2.36
USP48Q86UV5 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC29.79■■■□□ 2.36
USP48Q86UV5 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC29.79■■■□□ 2.36
USP48Q86UV5 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
USP48Q86UV5 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
USP48Q86UV5 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
USP48Q86UV5 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
USP48Q86UV5 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC29.79■■■□□ 2.36
USP48Q86UV5 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC29.79■■■□□ 2.36
USP48Q86UV5 PFN2-211ENST00000489155 636 ntTSL 4 BASIC29.78■■■□□ 2.36
USP48Q86UV5 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC29.78■■■□□ 2.36
USP48Q86UV5 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC29.78■■■□□ 2.36
USP48Q86UV5 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
USP48Q86UV5 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
USP48Q86UV5 MIR935-201ENST00000401179 91 ntBASIC29.77■■■□□ 2.36
USP48Q86UV5 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
USP48Q86UV5 PRTG-204ENST00000561292 833 ntTSL 3 BASIC29.77■■■□□ 2.36
USP48Q86UV5 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
USP48Q86UV5 MIR3960-201ENST00000583311 91 ntBASIC29.76■■■□□ 2.35
USP48Q86UV5 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
USP48Q86UV5 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
USP48Q86UV5 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC29.75■■■□□ 2.35
USP48Q86UV5 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC29.75■■■□□ 2.35
USP48Q86UV5 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
USP48Q86UV5 AC103724.3-201ENST00000564481 992 ntBASIC29.75■■■□□ 2.35
USP48Q86UV5 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC29.75■■■□□ 2.35
USP48Q86UV5 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC29.74■■■□□ 2.35
USP48Q86UV5 AC100797.4-201ENST00000631653 1827 ntBASIC29.74■■■□□ 2.35
USP48Q86UV5 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC29.74■■■□□ 2.35
USP48Q86UV5 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC29.74■■■□□ 2.35
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms