Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
CXCL12P48061 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC24.72■■□□□ 1.55
CXCL12P48061 LONRF2P2-201ENST00000439212 571 ntBASIC24.72■■□□□ 1.55
CXCL12P48061 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC24.72■■□□□ 1.55
CXCL12P48061 RPS2P7-201ENST00000447334 885 ntBASIC24.72■■□□□ 1.55
CXCL12P48061 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
CXCL12P48061 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC24.71■■□□□ 1.55
CXCL12P48061 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
CXCL12P48061 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC24.71■■□□□ 1.55
CXCL12P48061 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC24.7■■□□□ 1.55
CXCL12P48061 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC24.7■■□□□ 1.54
CXCL12P48061 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
CXCL12P48061 KRT125P-201ENST00000546827 989 ntBASIC24.7■■□□□ 1.54
CXCL12P48061 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC24.7■■□□□ 1.54
CXCL12P48061 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
CXCL12P48061 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CXCL12P48061 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC24.69■■□□□ 1.54
CXCL12P48061 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CXCL12P48061 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC24.69■■□□□ 1.54
CXCL12P48061 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC24.69■■□□□ 1.54
CXCL12P48061 WHAMMP3-201ENST00000611636 1609 ntBASIC24.68■■□□□ 1.54
CXCL12P48061 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC24.68■■□□□ 1.54
CXCL12P48061 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CXCL12P48061 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC24.67■■□□□ 1.54
CXCL12P48061 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CXCL12P48061 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
CXCL12P48061 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC24.67■■□□□ 1.54
CXCL12P48061 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
CXCL12P48061 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC24.66■■□□□ 1.54
CXCL12P48061 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC24.66■■□□□ 1.54
CXCL12P48061 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC24.66■■□□□ 1.54
CXCL12P48061 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC24.66■■□□□ 1.54
CXCL12P48061 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
CXCL12P48061 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC24.66■■□□□ 1.54
CXCL12P48061 PEMT-206ENST00000435340 960 ntTSL 5 BASIC24.66■■□□□ 1.54
CXCL12P48061 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC24.66■■□□□ 1.54
CXCL12P48061 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CXCL12P48061 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
CXCL12P48061 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CXCL12P48061 BX664725.1-201ENST00000438252 379 ntBASIC24.65■■□□□ 1.54
CXCL12P48061 MIR4787-201ENST00000607364 84 ntBASIC24.65■■□□□ 1.54
CXCL12P48061 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC24.65■■□□□ 1.54
CXCL12P48061 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
CXCL12P48061 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
CXCL12P48061 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC24.64■■□□□ 1.54
CXCL12P48061 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC24.64■■□□□ 1.54
CXCL12P48061 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.54
CXCL12P48061 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.53
CXCL12P48061 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
CXCL12P48061 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC24.63■■□□□ 1.53
CXCL12P48061 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
CXCL12P48061 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CXCL12P48061 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CXCL12P48061 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC24.63■■□□□ 1.53
CXCL12P48061 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CXCL12P48061 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC24.63■■□□□ 1.53
CXCL12P48061 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC24.63■■□□□ 1.53
CXCL12P48061 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CXCL12P48061 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
CXCL12P48061 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CXCL12P48061 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC24.62■■□□□ 1.53
CXCL12P48061 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC24.62■■□□□ 1.53
CXCL12P48061 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC24.61■■□□□ 1.53
CXCL12P48061 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CXCL12P48061 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CXCL12P48061 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CXCL12P48061 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC24.6■■□□□ 1.53
CXCL12P48061 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
CXCL12P48061 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
CXCL12P48061 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC24.6■■□□□ 1.53
CXCL12P48061 AC022616.5-201ENST00000518796 181 ntBASIC24.6■■□□□ 1.53
CXCL12P48061 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC24.6■■□□□ 1.53
CXCL12P48061 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
CXCL12P48061 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC24.6■■□□□ 1.53
CXCL12P48061 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC24.59■■□□□ 1.53
CXCL12P48061 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC24.59■■□□□ 1.53
CXCL12P48061 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC24.59■■□□□ 1.53
CXCL12P48061 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC24.59■■□□□ 1.53
CXCL12P48061 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC24.58■■□□□ 1.53
CXCL12P48061 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC24.58■■□□□ 1.52
CXCL12P48061 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
CXCL12P48061 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC24.57■■□□□ 1.52
CXCL12P48061 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CXCL12P48061 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC24.57■■□□□ 1.52
CXCL12P48061 UNC93B8-201ENST00000511903 705 ntBASIC24.57■■□□□ 1.52
CXCL12P48061 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CXCL12P48061 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC24.56■■□□□ 1.52
CXCL12P48061 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CXCL12P48061 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
CXCL12P48061 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC24.56■■□□□ 1.52
CXCL12P48061 KRT16P3-201ENST00000439127 1283 ntBASIC24.56■■□□□ 1.52
CXCL12P48061 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC24.56■■□□□ 1.52
CXCL12P48061 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
CXCL12P48061 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
CXCL12P48061 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC24.55■■□□□ 1.52
CXCL12P48061 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
CXCL12P48061 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC24.55■■□□□ 1.52
CXCL12P48061 KRT18P10-201ENST00000388836 1287 ntBASIC24.55■■□□□ 1.52
CXCL12P48061 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC24.55■■□□□ 1.52
CXCL12P48061 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC24.55■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms