Protein–RNA interactions for Protein: P00352

ALDH1A1, Retinal dehydrogenase 1, humanhuman

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALDH1A1P00352 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC28.48■■■□□ 2.15
ALDH1A1P00352 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC28.48■■■□□ 2.15
ALDH1A1P00352 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC28.48■■■□□ 2.15
ALDH1A1P00352 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC28.47■■■□□ 2.15
ALDH1A1P00352 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC28.47■■■□□ 2.15
ALDH1A1P00352 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
ALDH1A1P00352 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
ALDH1A1P00352 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC28.47■■■□□ 2.15
ALDH1A1P00352 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC28.46■■■□□ 2.15
ALDH1A1P00352 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC28.46■■■□□ 2.15
ALDH1A1P00352 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC28.46■■■□□ 2.15
ALDH1A1P00352 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
ALDH1A1P00352 NALT1-201ENST00000429224 738 ntTSL 5 BASIC28.45■■■□□ 2.14
ALDH1A1P00352 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC28.44■■■□□ 2.14
ALDH1A1P00352 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC28.43■■■□□ 2.14
ALDH1A1P00352 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
ALDH1A1P00352 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC28.43■■■□□ 2.14
ALDH1A1P00352 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
ALDH1A1P00352 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC28.42■■■□□ 2.14
ALDH1A1P00352 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC28.42■■■□□ 2.14
ALDH1A1P00352 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
ALDH1A1P00352 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
ALDH1A1P00352 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC28.41■■■□□ 2.14
ALDH1A1P00352 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
ALDH1A1P00352 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
ALDH1A1P00352 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
ALDH1A1P00352 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC28.4■■■□□ 2.14
ALDH1A1P00352 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC28.4■■■□□ 2.14
ALDH1A1P00352 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC28.4■■■□□ 2.14
ALDH1A1P00352 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC28.4■■■□□ 2.14
ALDH1A1P00352 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
ALDH1A1P00352 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
ALDH1A1P00352 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC28.39■■■□□ 2.14
ALDH1A1P00352 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
ALDH1A1P00352 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC28.39■■■□□ 2.14
ALDH1A1P00352 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC28.39■■■□□ 2.14
ALDH1A1P00352 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
ALDH1A1P00352 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC28.38■■■□□ 2.13
ALDH1A1P00352 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC28.38■■■□□ 2.13
ALDH1A1P00352 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC28.38■■■□□ 2.13
ALDH1A1P00352 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC28.38■■■□□ 2.13
ALDH1A1P00352 AP002414.2-202ENST00000590929 1450 ntBASIC28.38■■■□□ 2.13
ALDH1A1P00352 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
ALDH1A1P00352 KRT18P24-201ENST00000344739 1156 ntBASIC28.37■■■□□ 2.13
ALDH1A1P00352 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
ALDH1A1P00352 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC28.37■■■□□ 2.13
ALDH1A1P00352 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC28.37■■■□□ 2.13
ALDH1A1P00352 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC28.37■■■□□ 2.13
ALDH1A1P00352 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
ALDH1A1P00352 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC28.36■■■□□ 2.13
ALDH1A1P00352 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
ALDH1A1P00352 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC28.35■■■□□ 2.13
ALDH1A1P00352 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC28.35■■■□□ 2.13
ALDH1A1P00352 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC28.35■■■□□ 2.13
ALDH1A1P00352 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC28.35■■■□□ 2.13
ALDH1A1P00352 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC28.35■■■□□ 2.13
ALDH1A1P00352 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
ALDH1A1P00352 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
ALDH1A1P00352 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
ALDH1A1P00352 KRT18P10-201ENST00000388836 1287 ntBASIC28.34■■■□□ 2.13
ALDH1A1P00352 AC137630.3-201ENST00000607245 391 ntBASIC28.34■■■□□ 2.13
ALDH1A1P00352 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC28.34■■■□□ 2.13
ALDH1A1P00352 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
ALDH1A1P00352 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC28.33■■■□□ 2.13
ALDH1A1P00352 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
ALDH1A1P00352 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC28.33■■■□□ 2.13
ALDH1A1P00352 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC28.33■■■□□ 2.13
ALDH1A1P00352 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
ALDH1A1P00352 TSPY9P-201ENST00000440215 945 ntBASIC28.32■■■□□ 2.12
ALDH1A1P00352 TSPY11P-201ENST00000442607 1045 ntBASIC28.32■■■□□ 2.12
ALDH1A1P00352 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
ALDH1A1P00352 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
ALDH1A1P00352 ST7-AS1-201ENST00000456775 1889 ntBASIC28.32■■■□□ 2.12
ALDH1A1P00352 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC28.31■■■□□ 2.12
ALDH1A1P00352 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
ALDH1A1P00352 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC28.31■■■□□ 2.12
ALDH1A1P00352 RPP21-222ENST00000433076 577 ntTSL 2 BASIC28.31■■■□□ 2.12
ALDH1A1P00352 AC131281.2-201ENST00000520478 145 ntBASIC28.31■■■□□ 2.12
ALDH1A1P00352 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC28.31■■■□□ 2.12
ALDH1A1P00352 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
ALDH1A1P00352 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
ALDH1A1P00352 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
ALDH1A1P00352 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
ALDH1A1P00352 TRIR-202ENST00000588213 841 ntTSL 3 BASIC28.3■■■□□ 2.12
ALDH1A1P00352 AC021242.3-201ENST00000607598 1377 ntBASIC28.29■■■□□ 2.12
ALDH1A1P00352 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC28.29■■■□□ 2.12
ALDH1A1P00352 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
ALDH1A1P00352 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC28.29■■■□□ 2.12
ALDH1A1P00352 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC28.29■■■□□ 2.12
ALDH1A1P00352 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC28.28■■■□□ 2.12
ALDH1A1P00352 SRR-208ENST00000576848 588 ntTSL 4 BASIC28.28■■■□□ 2.12
ALDH1A1P00352 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC28.28■■■□□ 2.12
ALDH1A1P00352 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
ALDH1A1P00352 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC28.27■■■□□ 2.12
ALDH1A1P00352 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC28.27■■■□□ 2.12
ALDH1A1P00352 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
ALDH1A1P00352 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
ALDH1A1P00352 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC28.26■■■□□ 2.11
ALDH1A1P00352 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
ALDH1A1P00352 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC28.26■■■□□ 2.11
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms