Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00477Q96M19 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC13.16□□□□□ -0.3
LINC00477Q96M19 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00477Q96M19 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
LINC00477Q96M19 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00477Q96M19 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00477Q96M19 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00477Q96M19 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC13.16□□□□□ -0.3
LINC00477Q96M19 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC13.15□□□□□ -0.3
LINC00477Q96M19 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00477Q96M19 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00477Q96M19 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC13.15□□□□□ -0.3
LINC00477Q96M19 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00477Q96M19 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00477Q96M19 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC13.15□□□□□ -0.3
LINC00477Q96M19 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC13.15□□□□□ -0.3
LINC00477Q96M19 AC097374.2-201ENST00000618617 1306 ntBASIC13.15□□□□□ -0.3
LINC00477Q96M19 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00477Q96M19 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00477Q96M19 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00477Q96M19 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00477Q96M19 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC13.15□□□□□ -0.3
LINC00477Q96M19 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00477Q96M19 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00477Q96M19 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00477Q96M19 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00477Q96M19 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC13.15□□□□□ -0.3
LINC00477Q96M19 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00477Q96M19 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00477Q96M19 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00477Q96M19 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
LINC00477Q96M19 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC13.15□□□□□ -0.3
LINC00477Q96M19 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
LINC00477Q96M19 MIR662-201ENST00000384847 95 ntBASIC13.15□□□□□ -0.3
LINC00477Q96M19 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00477Q96M19 AC096633.1-201ENST00000422446 749 ntBASIC13.15□□□□□ -0.3
LINC00477Q96M19 AL137013.1-201ENST00000432946 1228 ntBASIC13.15□□□□□ -0.3
LINC00477Q96M19 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC13.15□□□□□ -0.3
LINC00477Q96M19 AC068472.1-201ENST00000474589 881 ntBASIC13.15□□□□□ -0.3
LINC00477Q96M19 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC13.15□□□□□ -0.3
LINC00477Q96M19 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC13.15□□□□□ -0.3
LINC00477Q96M19 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC13.15□□□□□ -0.3
LINC00477Q96M19 GPR32P1-201ENST00000601788 811 ntBASIC13.15□□□□□ -0.3
LINC00477Q96M19 AL139327.4-201ENST00000612362 153 ntBASIC13.15□□□□□ -0.3
LINC00477Q96M19 SPEG-225ENST00000617028 815 ntTSL 5 BASIC13.15□□□□□ -0.3
LINC00477Q96M19 AC005363.2-201ENST00000618631 242 ntBASIC13.15□□□□□ -0.3
LINC00477Q96M19 AC011558.1-201ENST00000623459 338 ntBASIC13.15□□□□□ -0.3
LINC00477Q96M19 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC13.15□□□□□ -0.3
LINC00477Q96M19 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC13.15□□□□□ -0.3
LINC00477Q96M19 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC13.15□□□□□ -0.3
LINC00477Q96M19 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00477Q96M19 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00477Q96M19 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00477Q96M19 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC13.15□□□□□ -0.3
LINC00477Q96M19 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00477Q96M19 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00477Q96M19 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
LINC00477Q96M19 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.31
LINC00477Q96M19 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.31
LINC00477Q96M19 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC13.14□□□□□ -0.31
LINC00477Q96M19 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00477Q96M19 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
LINC00477Q96M19 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00477Q96M19 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00477Q96M19 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC13.14□□□□□ -0.31
LINC00477Q96M19 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
LINC00477Q96M19 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC13.14□□□□□ -0.31
LINC00477Q96M19 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00477Q96M19 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC13.14□□□□□ -0.31
LINC00477Q96M19 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC13.14□□□□□ -0.31
LINC00477Q96M19 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC13.14□□□□□ -0.31
LINC00477Q96M19 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00477Q96M19 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00477Q96M19 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00477Q96M19 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00477Q96M19 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00477Q96M19 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00477Q96M19 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00477Q96M19 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00477Q96M19 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00477Q96M19 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC13.14□□□□□ -0.31
LINC00477Q96M19 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
LINC00477Q96M19 HOMER2P1-201ENST00000455653 964 ntBASIC13.14□□□□□ -0.31
LINC00477Q96M19 AC002558.1-201ENST00000488906 803 ntBASIC13.14□□□□□ -0.31
LINC00477Q96M19 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00477Q96M19 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC13.14□□□□□ -0.31
LINC00477Q96M19 AC010203.1-204ENST00000548782 407 ntBASIC13.14□□□□□ -0.31
LINC00477Q96M19 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC13.14□□□□□ -0.31
LINC00477Q96M19 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00477Q96M19 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
LINC00477Q96M19 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC13.14□□□□□ -0.31
LINC00477Q96M19 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00477Q96M19 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00477Q96M19 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00477Q96M19 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00477Q96M19 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC13.14□□□□□ -0.31
LINC00477Q96M19 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00477Q96M19 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00477Q96M19 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00477Q96M19 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms