Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 DFFB-212ENST00000625756 649 ntTSL 5 BASIC17.97■□□□□ 0.47
TRIM56Q9BRZ2 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
TRIM56Q9BRZ2 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM56Q9BRZ2 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM56Q9BRZ2 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM56Q9BRZ2 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM56Q9BRZ2 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM56Q9BRZ2 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.97■□□□□ 0.47
TRIM56Q9BRZ2 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM56Q9BRZ2 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM56Q9BRZ2 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
TRIM56Q9BRZ2 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC17.96■□□□□ 0.47
TRIM56Q9BRZ2 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC17.96■□□□□ 0.47
TRIM56Q9BRZ2 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM56Q9BRZ2 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM56Q9BRZ2 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.96■□□□□ 0.47
TRIM56Q9BRZ2 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC17.96■□□□□ 0.47
TRIM56Q9BRZ2 KRT89P-201ENST00000620027 1478 ntBASIC17.96■□□□□ 0.47
TRIM56Q9BRZ2 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.96■□□□□ 0.47
TRIM56Q9BRZ2 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM56Q9BRZ2 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM56Q9BRZ2 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.96■□□□□ 0.47
TRIM56Q9BRZ2 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM56Q9BRZ2 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM56Q9BRZ2 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM56Q9BRZ2 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM56Q9BRZ2 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM56Q9BRZ2 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC17.96■□□□□ 0.47
TRIM56Q9BRZ2 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM56Q9BRZ2 RBM42-202ENST00000586618 771 ntTSL 3 BASIC17.96■□□□□ 0.47
TRIM56Q9BRZ2 LITAF-220ENST00000620789 692 ntTSL 5 BASIC17.96■□□□□ 0.47
TRIM56Q9BRZ2 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM56Q9BRZ2 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM56Q9BRZ2 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM56Q9BRZ2 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM56Q9BRZ2 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM56Q9BRZ2 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM56Q9BRZ2 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
TRIM56Q9BRZ2 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM56Q9BRZ2 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM56Q9BRZ2 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.96■□□□□ 0.47
TRIM56Q9BRZ2 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 HLA-J-201ENST00000462773 1622 ntBASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 BX664615.1-201ENST00000443558 458 ntBASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 KRT18P35-201ENST00000510488 1269 ntBASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 AL590326.2-201ENST00000625139 305 ntBASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 AL138688.1-201ENST00000624851 1594 ntBASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM56Q9BRZ2 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM56Q9BRZ2 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
TRIM56Q9BRZ2 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM56Q9BRZ2 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM56Q9BRZ2 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.94■□□□□ 0.46
TRIM56Q9BRZ2 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC17.94■□□□□ 0.46
TRIM56Q9BRZ2 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM56Q9BRZ2 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM56Q9BRZ2 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM56Q9BRZ2 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM56Q9BRZ2 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM56Q9BRZ2 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
TRIM56Q9BRZ2 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM56Q9BRZ2 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC17.94■□□□□ 0.46
TRIM56Q9BRZ2 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM56Q9BRZ2 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM56Q9BRZ2 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM56Q9BRZ2 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.94■□□□□ 0.46
TRIM56Q9BRZ2 KRT18P48-201ENST00000434763 852 ntBASIC17.94■□□□□ 0.46
TRIM56Q9BRZ2 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms