Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 BANP-227ENST00000626016 2144 ntTSL 2 BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 AL023806.1-201ENST00000603994 1649 ntBASIC13.61□□□□□ -0.23
CCDC140Q96MF4 INTS4P1-201ENST00000438455 1935 ntBASIC13.6□□□□□ -0.23
CCDC140Q96MF4 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 MYCLP1-201ENST00000372451 1075 ntBASIC13.6□□□□□ -0.23
CCDC140Q96MF4 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 RCN1P2-201ENST00000398357 915 ntBASIC13.6□□□□□ -0.23
CCDC140Q96MF4 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 PNN-202ENST00000553331 656 ntTSL 3 BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 AC108860.2-201ENST00000562760 2183 ntBASIC13.6□□□□□ -0.23
CCDC140Q96MF4 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC140Q96MF4 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC13.59□□□□□ -0.23
CCDC140Q96MF4 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC140Q96MF4 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC13.59□□□□□ -0.23
CCDC140Q96MF4 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC140Q96MF4 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC13.59□□□□□ -0.23
CCDC140Q96MF4 KRT8P10-201ENST00000450021 1447 ntBASIC13.59□□□□□ -0.23
CCDC140Q96MF4 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC140Q96MF4 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC140Q96MF4 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC140Q96MF4 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC140Q96MF4 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC140Q96MF4 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC140Q96MF4 CD9-202ENST00000382515 1229 ntTSL 5 BASIC13.59□□□□□ -0.23
CCDC140Q96MF4 CTNS-203ENST00000399306 803 ntTSL 3 BASIC13.59□□□□□ -0.23
CCDC140Q96MF4 NUS1P2-201ENST00000417358 873 ntBASIC13.59□□□□□ -0.23
CCDC140Q96MF4 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC13.59□□□□□ -0.23
CCDC140Q96MF4 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
CCDC140Q96MF4 NMU-205ENST00000511469 756 ntTSL 3 BASIC13.59□□□□□ -0.23
CCDC140Q96MF4 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC13.59□□□□□ -0.23
CCDC140Q96MF4 AC111152.3-201ENST00000569699 673 ntBASIC13.59□□□□□ -0.23
CCDC140Q96MF4 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC13.59□□□□□ -0.23
CCDC140Q96MF4 TK1-204ENST00000590430 683 ntTSL 3 BASIC13.59□□□□□ -0.23
CCDC140Q96MF4 AC138894.3-201ENST00000603787 634 ntBASIC13.59□□□□□ -0.23
CCDC140Q96MF4 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
CCDC140Q96MF4 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
CCDC140Q96MF4 CCNC-219ENST00000627680 896 ntTSL 5 BASIC13.59□□□□□ -0.23
CCDC140Q96MF4 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC13.59□□□□□ -0.23
CCDC140Q96MF4 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC13.59□□□□□ -0.23
CCDC140Q96MF4 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC140Q96MF4 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC140Q96MF4 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC13.59□□□□□ -0.23
CCDC140Q96MF4 AL353593.2-201ENST00000602529 1483 ntBASIC13.59□□□□□ -0.23
CCDC140Q96MF4 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC140Q96MF4 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC13.59□□□□□ -0.23
CCDC140Q96MF4 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
CCDC140Q96MF4 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC140Q96MF4 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
CCDC140Q96MF4 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC13.59□□□□□ -0.23
CCDC140Q96MF4 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC13.59□□□□□ -0.23
CCDC140Q96MF4 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.23
CCDC140Q96MF4 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CCDC140Q96MF4 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CCDC140Q96MF4 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CCDC140Q96MF4 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC13.58□□□□□ -0.24
CCDC140Q96MF4 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC13.58□□□□□ -0.24
CCDC140Q96MF4 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms