Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC19.46■□□□□ 0.71
CCDC112Q8NEF3 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC19.46■□□□□ 0.71
CCDC112Q8NEF3 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC19.46■□□□□ 0.71
CCDC112Q8NEF3 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC112Q8NEF3 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC112Q8NEF3 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC112Q8NEF3 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
CCDC112Q8NEF3 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC112Q8NEF3 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
CCDC112Q8NEF3 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC19.46■□□□□ 0.71
CCDC112Q8NEF3 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC112Q8NEF3 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC19.46■□□□□ 0.71
CCDC112Q8NEF3 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC112Q8NEF3 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC112Q8NEF3 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC19.46■□□□□ 0.71
CCDC112Q8NEF3 PGR-209ENST00000617858 2816 ntTSL 5 BASIC19.46■□□□□ 0.71
CCDC112Q8NEF3 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC112Q8NEF3 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC112Q8NEF3 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC112Q8NEF3 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC19.46■□□□□ 0.71
CCDC112Q8NEF3 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.7
CCDC112Q8NEF3 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC112Q8NEF3 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC112Q8NEF3 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
CCDC112Q8NEF3 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
CCDC112Q8NEF3 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
CCDC112Q8NEF3 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
CCDC112Q8NEF3 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC19.45■□□□□ 0.7
CCDC112Q8NEF3 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC19.45■□□□□ 0.7
CCDC112Q8NEF3 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
CCDC112Q8NEF3 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC112Q8NEF3 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC112Q8NEF3 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC112Q8NEF3 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC112Q8NEF3 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC19.45■□□□□ 0.7
CCDC112Q8NEF3 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC19.45■□□□□ 0.7
CCDC112Q8NEF3 MFAP1P1-201ENST00000442257 1255 ntBASIC19.45■□□□□ 0.7
CCDC112Q8NEF3 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC112Q8NEF3 MIR4674-201ENST00000582457 87 ntBASIC19.45■□□□□ 0.7
CCDC112Q8NEF3 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC19.45■□□□□ 0.7
CCDC112Q8NEF3 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
CCDC112Q8NEF3 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC112Q8NEF3 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC112Q8NEF3 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC19.45■□□□□ 0.7
CCDC112Q8NEF3 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC112Q8NEF3 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC112Q8NEF3 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC19.45■□□□□ 0.7
CCDC112Q8NEF3 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC112Q8NEF3 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC112Q8NEF3 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC19.45■□□□□ 0.7
CCDC112Q8NEF3 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC112Q8NEF3 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC112Q8NEF3 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC19.45■□□□□ 0.7
CCDC112Q8NEF3 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC112Q8NEF3 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC19.44■□□□□ 0.7
CCDC112Q8NEF3 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC112Q8NEF3 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC112Q8NEF3 CES3-203ENST00000543856 3178 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC112Q8NEF3 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC112Q8NEF3 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC112Q8NEF3 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC112Q8NEF3 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC112Q8NEF3 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC112Q8NEF3 NFIC-211ENST00000641145 8399 ntBASIC19.44■□□□□ 0.7
CCDC112Q8NEF3 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC112Q8NEF3 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC112Q8NEF3 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC112Q8NEF3 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
CCDC112Q8NEF3 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC112Q8NEF3 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
CCDC112Q8NEF3 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC19.44■□□□□ 0.7
CCDC112Q8NEF3 MIR4497-201ENST00000583208 89 ntBASIC19.44■□□□□ 0.7
CCDC112Q8NEF3 DGCR10-201ENST00000609839 495 ntBASIC19.44■□□□□ 0.7
CCDC112Q8NEF3 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CCDC112Q8NEF3 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
CCDC112Q8NEF3 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC112Q8NEF3 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC112Q8NEF3 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC112Q8NEF3 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC112Q8NEF3 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC112Q8NEF3 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC112Q8NEF3 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC112Q8NEF3 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC112Q8NEF3 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
CCDC112Q8NEF3 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC19.43■□□□□ 0.7
CCDC112Q8NEF3 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC112Q8NEF3 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC112Q8NEF3 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC112Q8NEF3 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC112Q8NEF3 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC112Q8NEF3 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC112Q8NEF3 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
CCDC112Q8NEF3 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC112Q8NEF3 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC112Q8NEF3 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC112Q8NEF3 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC112Q8NEF3 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC112Q8NEF3 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC112Q8NEF3 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC112Q8NEF3 AF186192.3-201ENST00000583427 947 ntBASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms