RNA–Protein interactions for RNA: ENST00000340477.9

SYNE4-202, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE4, Length 1,004 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-202ENST00000340477 NISCHQ9Y2I1 1504 aa46.49■■■■■ 5.03
SYNE4-202ENST00000340477 CCDC180Q9P1Z9 1646 aa41.45■■■■■ 4.23
SYNE4-202ENST00000340477 ABCC9O60706 1549 aa40.45■■■■■ 4.07
SYNE4-202ENST00000340477 RB1CC1Q8TDY2 1594 aa39■■■■□ 3.83
SYNE4-202ENST00000340477 NACADO15069 1562 aa38.93■■■■□ 3.82
SYNE4-202ENST00000340477 DCAF8L2P0C7V8 631 aa38.85■■■■□ 3.81
SYNE4-202ENST00000340477 ZCCHC6Q5VYS8 1495 aaKnown RBP38.73■■■■□ 3.79
SYNE4-202ENST00000340477 MYO15BQ96JP2 1530 aa38.65■■■■□ 3.78
SYNE4-202ENST00000340477 DCAF1Q9Y4B6 1507 aa38.49■■■■□ 3.75
SYNE4-202ENST00000340477 UNC13AQ9UPW8 1703 aa38.08■■■■□ 3.69
SYNE4-202ENST00000340477 SCRIBQ14160 1630 aa37.77■■■■□ 3.64
SYNE4-202ENST00000340477 PABPN1Q86U42 306 aaKnown RBP eCLIP37.73■■■■□ 3.63
SYNE4-202ENST00000340477 BICRAQ9NZM4 1560 aa37.69■■■■□ 3.62
SYNE4-202ENST00000340477 SHROOM4Q9ULL8 1493 aa37.44■■■■□ 3.58
SYNE4-202ENST00000340477 DNAJC5BQ9UF47 199 aa36.94■■■■□ 3.5
SYNE4-202ENST00000340477 EIF4G1Q04637 1599 aaKnown RBP36.77■■■■□ 3.48
SYNE4-202ENST00000340477 CC2D2AQ9P2K1 1620 aa36.62■■■■□ 3.45
SYNE4-202ENST00000340477 CECR2Q9BXF3 1484 aa36.37■■■■□ 3.41
SYNE4-202ENST00000340477 SMARCA4P51532 1647 aa36.12■■■■□ 3.37
SYNE4-202ENST00000340477 BAZ1AQ9NRL2 1556 aaPredicted RBP36.1■■■■□ 3.37
SYNE4-202ENST00000340477 SMARCA2P51531 1590 aa35.92■■■■□ 3.34
SYNE4-202ENST00000340477 ATAD2BQ9ULI0 1458 aa35.86■■■■□ 3.33
SYNE4-202ENST00000340477 NCAPD3P42695 1498 aa35.84■■■■□ 3.33
SYNE4-202ENST00000340477 MROH2BQ7Z745 1585 aa35.79■■■■□ 3.32
SYNE4-202ENST00000340477 HMGXB3Q12766 1538 aa35.74■■■■□ 3.31
SYNE4-202ENST00000340477 PEG3Q9GZU2 1588 aa35.74■■■■□ 3.31
SYNE4-202ENST00000340477 BAZ1BQ9UIG0 1483 aaKnown RBP35.65■■■■□ 3.3
SYNE4-202ENST00000340477 WIZO95785 1651 aa35.45■■■■□ 3.27
SYNE4-202ENST00000340477 RSF1Q96T23 1441 aaPredicted RBP35.37■■■■□ 3.25
SYNE4-202ENST00000340477 TOP2AP11388 1531 aaKnown RBP35.11■■■■□ 3.21
SYNE4-202ENST00000340477 LAMC3Q9Y6N6 1575 aa34.99■■■■□ 3.19
SYNE4-202ENST00000340477 ERCC6Q03468 1493 aa34.97■■■■□ 3.19
SYNE4-202ENST00000340477 NESP48681 1621 aa34.96■■■■□ 3.19
SYNE4-202ENST00000340477 CADPSQ9ULU8 1353 aa34.8■■■■□ 3.16
SYNE4-202ENST00000340477 PDS5BQ9NTI5 1447 aa34.74■■■■□ 3.15
SYNE4-202ENST00000340477 KIF21AQ7Z4S6 1674 aa34.66■■■■□ 3.14
SYNE4-202ENST00000340477 CCDC88BA6NC98 1476 aa34.62■■■■□ 3.13
SYNE4-202ENST00000340477 CFTRP13569 1480 aa34.6■■■■□ 3.13
SYNE4-202ENST00000340477 CUX2O14529 1486 aa34.57■■■■□ 3.12
SYNE4-202ENST00000340477 THOC2Q8NI27 1593 aaKnown RBP34.51■■■■□ 3.12
SYNE4-202ENST00000340477 PRDM2Q13029 1718 aa34.5■■■■□ 3.11
SYNE4-202ENST00000340477 SUPT5HO00267 1087 aaKnown RBP34.5■■■■□ 3.11
SYNE4-202ENST00000340477 CEP164Q9UPV0 1460 aa34.45■■■■□ 3.1
SYNE4-202ENST00000340477 FANCD2Q9BXW9 1451 aa34.44■■■■□ 3.1
SYNE4-202ENST00000340477 MRC2Q9UBG0 1479 aa34.38■■■■□ 3.09
SYNE4-202ENST00000340477 WDR62O43379 1518 aa34.25■■■■□ 3.07
SYNE4-202ENST00000340477 URB2Q14146 1524 aaKnown RBP34.05■■■■□ 3.04
SYNE4-202ENST00000340477 ABCC8Q09428 1581 aa33.94■■■■□ 3.02
SYNE4-202ENST00000340477 DNMBPQ6XZF7 1577 aa33.89■■■■□ 3.02
SYNE4-202ENST00000340477 TOPBP1Q92547 1522 aa33.88■■■■□ 3.01
SYNE4-202ENST00000340477 IFT140Q96RY7 1462 aa33.7■■■□□ 2.99
SYNE4-202ENST00000340477 CUX1P39880 1505 aa33.6■■■□□ 2.97
SYNE4-202ENST00000340477 POLA1P09884 1462 aaPredicted RBP33.58■■■□□ 2.97
SYNE4-202ENST00000340477 FGD5Q6ZNL6 1462 aa33.51■■■□□ 2.96
SYNE4-202ENST00000340477 TARBP1Q13395 1621 aaKnown RBP33.51■■■□□ 2.96
SYNE4-202ENST00000340477 ZNF608Q9ULD9 1512 aaPredicted RBP33.47■■■□□ 2.95
SYNE4-202ENST00000340477 SOGA1O94964 1423 aa33.45■■■□□ 2.94
SYNE4-202ENST00000340477 EIF4G3O43432 1585 aaKnown RBP33.44■■■□□ 2.94
SYNE4-202ENST00000340477 WRNQ14191 1432 aaPredicted RBP eCLIP33.42■■■□□ 2.94
SYNE4-202ENST00000340477 RAD54L2Q9Y4B4 1467 aa33.4■■■□□ 2.94
SYNE4-202ENST00000340477 DNAJC5Q9H3Z4 198 aa33.38■■■□□ 2.93
SYNE4-202ENST00000340477 BIVM-ERCC5R4GMW8 1640 aa33.38■■■□□ 2.93
SYNE4-202ENST00000340477 TOP2BQ02880 1626 aa33.37■■■□□ 2.93
SYNE4-202ENST00000340477 WDR97A6NE52 1622 aa33.35■■■□□ 2.93
SYNE4-202ENST00000340477 SYNJ1O43426 1573 aa33.32■■■□□ 2.92
SYNE4-202ENST00000340477 AQRO60306 1485 aaKnown RBP eCLIP33.28■■■□□ 2.923e-7■■■■■ 30.6
SYNE4-202ENST00000340477 TDRD9Q8NDG6 1382 aaKnown RBP33.22■■■□□ 2.91
SYNE4-202ENST00000340477 ABCA10Q8WWZ4 1543 aa33.19■■■□□ 2.9
SYNE4-202ENST00000340477 GRIN2BQ13224 1484 aa33.1■■■□□ 2.89
SYNE4-202ENST00000340477 PBRM1Q86U86 1689 aa33.1■■■□□ 2.89
SYNE4-202ENST00000340477 GAPVD1Q14C86 1478 aa33.09■■■□□ 2.89
SYNE4-202ENST00000340477 ABCA5Q8WWZ7 1642 aa33.09■■■□□ 2.89
SYNE4-202ENST00000340477 OSCARQ8IYS5 282 aa33.07■■■□□ 2.88
SYNE4-202ENST00000340477 CHD1O14646 1710 aa33.04■■■□□ 2.88
SYNE4-202ENST00000340477 SNAPC4Q5SXM2 1469 aa33.04■■■□□ 2.88
SYNE4-202ENST00000340477 MAGI1Q96QZ7 1491 aaPredicted RBP33.03■■■□□ 2.88
SYNE4-202ENST00000340477 FBLN2P98095 1184 aa32.95■■■□□ 2.87
SYNE4-202ENST00000340477 SYNJ2O15056 1496 aa32.88■■■□□ 2.85
SYNE4-202ENST00000340477 CHMP7Q8WUX9 453 aaPredicted RBP32.86■■■□□ 2.85
SYNE4-202ENST00000340477 ERICH3Q5RHP9 1530 aa32.83■■■□□ 2.85
SYNE4-202ENST00000340477 ADAMTS12P58397 1594 aa32.79■■■□□ 2.84
SYNE4-202ENST00000340477 KIF27Q86VH2 1401 aa32.75■■■□□ 2.83
SYNE4-202ENST00000340477 FHAD1B1AJZ9 1412 aa32.7■■■□□ 2.83
SYNE4-202ENST00000340477 GRIN2AQ12879 1464 aa32.66■■■□□ 2.82
SYNE4-202ENST00000340477 TRIM41Q8WV44 630 aa32.62■■■□□ 2.81
SYNE4-202ENST00000340477 CLASP1Q7Z460 1538 aa32.61■■■□□ 2.81
SYNE4-202ENST00000340477 CUL7Q14999 1698 aa32.59■■■□□ 2.81
SYNE4-202ENST00000340477 RIMBP3CA6NJZ7 1639 aa32.59■■■□□ 2.81
SYNE4-202ENST00000340477 RIMBP3BA6NNM3 1639 aa32.59■■■□□ 2.81
SYNE4-202ENST00000340477 RIMBP3Q9UFD9 1639 aa32.59■■■□□ 2.81
SYNE4-202ENST00000340477 ARHGEF11O15085 1522 aa32.56■■■□□ 2.8
SYNE4-202ENST00000340477 IGF1RP08069 1367 aa32.5■■■□□ 2.79
SYNE4-202ENST00000340477 NUP160Q12769 1436 aa32.48■■■□□ 2.79
SYNE4-202ENST00000340477 CEP170Q5SW79 1584 aa32.48■■■□□ 2.79
SYNE4-202ENST00000340477 CARMIL1Q5VZK9 1371 aa32.37■■■□□ 2.77
SYNE4-202ENST00000340477 RUSC2Q8N2Y8 1516 aa32.31■■■□□ 2.76
SYNE4-202ENST00000340477 SHROOM2Q13796 1616 aa32.27■■■□□ 2.76
SYNE4-202ENST00000340477 ARAP1Q96P48 1450 aa32.27■■■□□ 2.76
SYNE4-202ENST00000340477 CYB5RLQ6IPT4 315 aa32.22■■■□□ 2.75
SYNE4-202ENST00000340477 RAPGEF2Q9Y4G8 1499 aa32.22■■■□□ 2.75
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms