Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
NUP98P52948 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NUP98P52948 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
NUP98P52948 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
NUP98P52948 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NUP98P52948 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NUP98P52948 AC004461.1-201ENST00000412461 403 ntBASIC21.73■■□□□ 1.07
NUP98P52948 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
NUP98P52948 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
NUP98P52948 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC21.73■■□□□ 1.07
NUP98P52948 SPCS2P1-201ENST00000561636 679 ntBASIC21.73■■□□□ 1.07
NUP98P52948 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC21.73■■□□□ 1.07
NUP98P52948 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC21.73■■□□□ 1.07
NUP98P52948 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
NUP98P52948 LINC01451-201ENST00000623792 534 ntBASIC21.73■■□□□ 1.07
NUP98P52948 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
NUP98P52948 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NUP98P52948 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NUP98P52948 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC21.73■■□□□ 1.07
NUP98P52948 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC21.73■■□□□ 1.07
NUP98P52948 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC21.73■■□□□ 1.07
NUP98P52948 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC21.73■■□□□ 1.07
NUP98P52948 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NUP98P52948 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
NUP98P52948 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NUP98P52948 AC129492.6-201ENST00000611383 1305 ntBASIC21.73■■□□□ 1.07
NUP98P52948 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
NUP98P52948 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC21.73■■□□□ 1.07
NUP98P52948 FALEC-201ENST00000416894 566 ntTSL 3 BASIC21.73■■□□□ 1.07
NUP98P52948 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC21.73■■□□□ 1.07
NUP98P52948 SNHG9-202ENST00000564014 471 ntBASIC21.73■■□□□ 1.07
NUP98P52948 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC21.73■■□□□ 1.07
NUP98P52948 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC21.73■■□□□ 1.07
NUP98P52948 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
NUP98P52948 LYSMD4-203ENST00000378904 2122 ntBASIC21.73■■□□□ 1.07
NUP98P52948 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC21.73■■□□□ 1.07
NUP98P52948 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC21.73■■□□□ 1.07
NUP98P52948 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC21.73■■□□□ 1.07
NUP98P52948 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC21.73■■□□□ 1.07
NUP98P52948 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC21.72■■□□□ 1.07
NUP98P52948 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NUP98P52948 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
NUP98P52948 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC21.72■■□□□ 1.07
NUP98P52948 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
NUP98P52948 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NUP98P52948 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NUP98P52948 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC21.72■■□□□ 1.07
NUP98P52948 AC023141.5-201ENST00000458585 616 ntBASIC21.72■■□□□ 1.07
NUP98P52948 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC21.72■■□□□ 1.07
NUP98P52948 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC21.72■■□□□ 1.07
NUP98P52948 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
NUP98P52948 PI4KAP1-204ENST00000612579 1703 ntBASIC21.72■■□□□ 1.07
NUP98P52948 AC004408.2-201ENST00000623613 2777 ntBASIC21.72■■□□□ 1.07
NUP98P52948 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NUP98P52948 BICD1-207ENST00000551848 1962 ntBASIC21.72■■□□□ 1.07
NUP98P52948 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
NUP98P52948 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
NUP98P52948 KRT18P28-201ENST00000453838 1332 ntBASIC21.71■■□□□ 1.07
NUP98P52948 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC21.71■■□□□ 1.07
NUP98P52948 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
NUP98P52948 AL645939.2-201ENST00000427340 991 ntBASIC21.71■■□□□ 1.07
NUP98P52948 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC21.71■■□□□ 1.07
NUP98P52948 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC21.71■■□□□ 1.07
NUP98P52948 CCND1-203ENST00000536559 553 ntTSL 3 BASIC21.71■■□□□ 1.07
NUP98P52948 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC21.71■■□□□ 1.07
NUP98P52948 HNRNPRP1-201ENST00000453465 1695 ntBASIC21.71■■□□□ 1.07
NUP98P52948 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
NUP98P52948 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
NUP98P52948 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
NUP98P52948 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
NUP98P52948 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
NUP98P52948 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
NUP98P52948 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
NUP98P52948 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
NUP98P52948 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC21.71■■□□□ 1.07
NUP98P52948 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC21.71■■□□□ 1.07
NUP98P52948 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
NUP98P52948 AP002472.1-201ENST00000577490 586 ntBASIC21.71■■□□□ 1.07
NUP98P52948 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC21.71■■□□□ 1.07
NUP98P52948 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC21.7■■□□□ 1.07
NUP98P52948 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC21.7■■□□□ 1.06
NUP98P52948 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NUP98P52948 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC21.7■■□□□ 1.06
NUP98P52948 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
NUP98P52948 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
NUP98P52948 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NUP98P52948 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
NUP98P52948 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC21.7■■□□□ 1.06
NUP98P52948 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
NUP98P52948 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC21.7■■□□□ 1.06
NUP98P52948 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC21.7■■□□□ 1.06
NUP98P52948 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC21.7■■□□□ 1.06
NUP98P52948 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
NUP98P52948 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC21.7■■□□□ 1.06
NUP98P52948 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NUP98P52948 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
NUP98P52948 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC21.69■■□□□ 1.06
NUP98P52948 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NUP98P52948 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
NUP98P52948 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC21.69■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms