RNA–Protein interactions for RNA: ENST00000055335.10

PPP1R3F-201, Transcript of protein phosphatase 1 regulatory subunit 3F, humanhuman

APPRIS P1 TSL 2 BASIC

Gene PPP1R3F, Length 3,421 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP1R3F-201ENST00000055335 NISCHQ9Y2I1 1504 aa38.21■■■■□ 3.71
PPP1R3F-201ENST00000055335 SHROOM4Q9ULL8 1493 aa34.51■■■■□ 3.12
PPP1R3F-201ENST00000055335 SUPT5HO00267 1087 aaKnown RBP34.32■■■■□ 3.09
PPP1R3F-201ENST00000055335 HRCP23327 699 aa33.6■■■□□ 2.97
PPP1R3F-201ENST00000055335 PCGF6Q9BYE7 350 aa33.53■■■□□ 2.96
PPP1R3F-201ENST00000055335 PPARGC1BQ86YN6 1023 aaKnown RBP33.35■■■□□ 2.93
PPP1R3F-201ENST00000055335 CHIC1Q5VXU3 224 aa33.17■■■□□ 2.9
PPP1R3F-201ENST00000055335 DCAF8L2P0C7V8 631 aa33.15■■■□□ 2.9
PPP1R3F-201ENST00000055335 MYO15BQ96JP2 1530 aa33.11■■■□□ 2.89
PPP1R3F-201ENST00000055335 LOC105371045A0A1W2PR82 267 aa32.71■■■□□ 2.83
PPP1R3F-201ENST00000055335 ZCCHC6Q5VYS8 1495 aaKnown RBP32.34■■■□□ 2.77
PPP1R3F-201ENST00000055335 TRIM26Q12899 539 aaPredicted RBP32.18■■■□□ 2.74
PPP1R3F-201ENST00000055335 EHMT2Q96KQ7 1210 aa32.07■■■□□ 2.73
PPP1R3F-201ENST00000055335 DCAF1Q9Y4B6 1507 aa32.02■■■□□ 2.72
PPP1R3F-201ENST00000055335 FAM9AQ8IZU1 332 aaPredicted RBP31.9■■■□□ 2.7
PPP1R3F-201ENST00000055335 SCAF1Q9H7N4 1312 aaKnown RBP31.7■■■□□ 2.67
PPP1R3F-201ENST00000055335 ZEB1P37275 1124 aaPredicted RBP31.67■■■□□ 2.66
PPP1R3F-201ENST00000055335 PELP1Q8IZL8 1130 aaKnown RBP31.67■■■□□ 2.66
PPP1R3F-201ENST00000055335 TRIM41Q8WV44 630 aa31.56■■■□□ 2.64
PPP1R3F-201ENST00000055335 CCDC180Q9P1Z9 1646 aa31.47■■■□□ 2.63
PPP1R3F-201ENST00000055335 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.21■■■□□ 2.59
PPP1R3F-201ENST00000055335 TTBK1Q5TCY1 1321 aaPredicted RBP31.16■■■□□ 2.58
PPP1R3F-201ENST00000055335 CCER1Q8TC90 406 aaPredicted RBP31.13■■■□□ 2.57
PPP1R3F-201ENST00000055335 NEUROD1Q13562 356 aa31.06■■■□□ 2.56
PPP1R3F-201ENST00000055335 ACIN1Q9UKV3 1341 aaKnown RBP31■■■□□ 2.55
PPP1R3F-201ENST00000055335 GTF3C3Q9Y5Q9 886 aa30.94■■■□□ 2.54
PPP1R3F-201ENST00000055335 DIEXFQ68CQ4 756 aaKnown RBP30.83■■■□□ 2.53
PPP1R3F-201ENST00000055335 RSF1Q96T23 1441 aaPredicted RBP30.82■■■□□ 2.52
PPP1R3F-201ENST00000055335 CENPBP07199 599 aaPredicted RBP30.77■■■□□ 2.52
PPP1R3F-201ENST00000055335 YTHDC1Q96MU7 727 aaKnown RBP30.7■■■□□ 2.51
PPP1R3F-201ENST00000055335 ABCC9O60706 1549 aa30.62■■■□□ 2.49
PPP1R3F-201ENST00000055335 RB1CC1Q8TDY2 1594 aa30.61■■■□□ 2.49
PPP1R3F-201ENST00000055335 SCRIBQ14160 1630 aa30.59■■■□□ 2.49
PPP1R3F-201ENST00000055335 MYT1Q01538 1121 aa30.21■■■□□ 2.43
PPP1R3F-201ENST00000055335 ZNF316A6NFI3 1004 aaPredicted RBP30.19■■■□□ 2.42
PPP1R3F-201ENST00000055335 CECR2Q9BXF3 1484 aa30.19■■■□□ 2.42
PPP1R3F-201ENST00000055335 UBTFP17480 764 aaKnown RBP30.15■■■□□ 2.42
PPP1R3F-201ENST00000055335 HNRNPUL2Q1KMD3 747 aaKnown RBP30.11■■■□□ 2.41
PPP1R3F-201ENST00000055335 MIER1Q8N108 512 aa30.09■■■□□ 2.41
PPP1R3F-201ENST00000055335 MROH2BQ7Z745 1585 aa29.99■■■□□ 2.39
PPP1R3F-201ENST00000055335 RANGAP1P46060 587 aaPredicted RBP29.92■■■□□ 2.38
PPP1R3F-201ENST00000055335 CEP162Q5TB80 1403 aa29.88■■■□□ 2.37
PPP1R3F-201ENST00000055335 WIZO95785 1651 aa29.84■■■□□ 2.37
PPP1R3F-201ENST00000055335 CCDC88BA6NC98 1476 aa29.76■■■□□ 2.35
PPP1R3F-201ENST00000055335 ABCC8Q09428 1581 aa29.75■■■□□ 2.35
PPP1R3F-201ENST00000055335 SOGA1O94964 1423 aa29.74■■■□□ 2.35
PPP1R3F-201ENST00000055335 CSRNP3Q8WYN3 585 aa29.72■■■□□ 2.35
PPP1R3F-201ENST00000055335 WRNQ14191 1432 aaPredicted RBP eCLIP29.61■■■□□ 2.33
PPP1R3F-201ENST00000055335 APLP2Q06481 763 aa29.61■■■□□ 2.33
PPP1R3F-201ENST00000055335 TNIKQ9UKE5 1360 aa29.57■■■□□ 2.32
PPP1R3F-201ENST00000055335 RUSC2Q8N2Y8 1516 aa29.55■■■□□ 2.32
PPP1R3F-201ENST00000055335 SUPT16HQ9Y5B9 1047 aaKnown RBP29.36■■■□□ 2.29
PPP1R3F-201ENST00000055335 BAZ1AQ9NRL2 1556 aaPredicted RBP29.34■■■□□ 2.29
PPP1R3F-201ENST00000055335 BCANQ96GW7 911 aa29.29■■■□□ 2.28
PPP1R3F-201ENST00000055335 GOLGA3Q08378 1498 aa29.25■■■□□ 2.27
PPP1R3F-201ENST00000055335 NACADO15069 1562 aa29.21■■■□□ 2.27
PPP1R3F-201ENST00000055335 EIF4G1Q04637 1599 aaKnown RBP29.21■■■□□ 2.27
PPP1R3F-201ENST00000055335 ITGAEP38570 1179 aa29.2■■■□□ 2.27
PPP1R3F-201ENST00000055335 CLIP1P30622 1438 aa29.2■■■□□ 2.26
PPP1R3F-201ENST00000055335 EEA1Q15075 1411 aa29.12■■■□□ 2.25
PPP1R3F-201ENST00000055335 TSHZ2Q9NRE2 1034 aa29.11■■■□□ 2.25
PPP1R3F-201ENST00000055335 KCNH8Q96L42 1107 aa29.08■■■□□ 2.25
PPP1R3F-201ENST00000055335 TOP2AP11388 1531 aaKnown RBP29.08■■■□□ 2.25
PPP1R3F-201ENST00000055335 PABPN1Q86U42 306 aaKnown RBP eCLIP29.06■■■□□ 2.24
PPP1R3F-201ENST00000055335 SMARCA2P51531 1590 aa29.04■■■□□ 2.24
PPP1R3F-201ENST00000055335 ANP32EQ9BTT0 268 aa28.97■■■□□ 2.23
PPP1R3F-201ENST00000055335 VPS8Q8N3P4 1428 aa28.96■■■□□ 2.23
PPP1R3F-201ENST00000055335 CEP164Q9UPV0 1460 aa28.94■■■□□ 2.22
PPP1R3F-201ENST00000055335 DHX57Q6P158 1386 aaKnown RBP28.91■■■□□ 2.22
PPP1R3F-201ENST00000055335 FKBP8Q14318 412 aa28.91■■■□□ 2.22
PPP1R3F-201ENST00000055335 KANK4Q5T7N3 995 aaPredicted RBP28.9■■■□□ 2.22
PPP1R3F-201ENST00000055335 CLSPNQ9HAW4 1339 aa28.89■■■□□ 2.21
PPP1R3F-201ENST00000055335 SMARCA4P51532 1647 aa28.85■■■□□ 2.21
PPP1R3F-201ENST00000055335 RAPGEF2Q9Y4G8 1499 aa28.85■■■□□ 2.21
PPP1R3F-201ENST00000055335 DDX10Q13206 875 aaKnown RBP28.8■■■□□ 2.2
PPP1R3F-201ENST00000055335 HIRIP3Q9BW71 556 aaPredicted RBP28.77■■■□□ 2.2
PPP1R3F-201ENST00000055335 BCL11AQ9H165 835 aa28.73■■■□□ 2.19
PPP1R3F-201ENST00000055335 TRIM52Q96A61 297 aa28.71■■■□□ 2.19
PPP1R3F-201ENST00000055335 NEFLP07196 543 aa28.69■■■□□ 2.18
PPP1R3F-201ENST00000055335 SYNJ1O43426 1573 aa28.65■■■□□ 2.18
PPP1R3F-201ENST00000055335 KIF21BO75037 1637 aa28.65■■■□□ 2.18
PPP1R3F-201ENST00000055335 SIN3AQ96ST3 1273 aa28.58■■■□□ 2.17
PPP1R3F-201ENST00000055335 ATP1B4Q9UN42 357 aaPredicted RBP28.55■■■□□ 2.16
PPP1R3F-201ENST00000055335 RBM19Q9Y4C8 960 aaKnown RBP28.54■■■□□ 2.16
PPP1R3F-201ENST00000055335 FAM50AQ14320 339 aaKnown RBP28.49■■■□□ 2.15
PPP1R3F-201ENST00000055335 BAZ1BQ9UIG0 1483 aaKnown RBP28.46■■■□□ 2.15
PPP1R3F-201ENST00000055335 CCNB3Q8WWL7 1395 aa28.45■■■□□ 2.14
PPP1R3F-201ENST00000055335 IRX6P78412 446 aaPredicted RBP28.42■■■□□ 2.14
PPP1R3F-201ENST00000055335 RAB3GAP2Q9H2M9 1393 aa28.41■■■□□ 2.14
PPP1R3F-201ENST00000055335 ANP32CO43423 234 aa28.37■■■□□ 2.13
PPP1R3F-201ENST00000055335 ARAP1Q96P48 1450 aa28.35■■■□□ 2.13
PPP1R3F-201ENST00000055335 ERICH6Q7L0X2 663 aa28.31■■■□□ 2.12
PPP1R3F-201ENST00000055335 P3H3Q8IVL6 736 aa28.3■■■□□ 2.12
PPP1R3F-201ENST00000055335 RRBP1Q9P2E9 1410 aaKnown RBP28.25■■■□□ 2.11
PPP1R3F-201ENST00000055335 PPP1R15AO75807 674 aaPredicted RBP28.19■■■□□ 2.1
PPP1R3F-201ENST00000055335 HNRNPUQ00839 825 aaKnown RBP eCLIP28.18■■■□□ 2.1
PPP1R3F-201ENST00000055335 MSH5O43196 834 aa28.18■■■□□ 2.1
PPP1R3F-201ENST00000055335 WDR97A6NE52 1622 aa28.15■■■□□ 2.1
PPP1R3F-201ENST00000055335 UNC13AQ9UPW8 1703 aa28.13■■■□□ 2.09
PPP1R3F-201ENST00000055335 SETD5Q9C0A6 1442 aa28.12■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms