Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC15.84■□□□□ 0.13
RNFT1Q5M7Z0 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
RNFT1Q5M7Z0 GID4-202ENST00000376345 1391 ntTSL 3 BASIC15.84■□□□□ 0.13
RNFT1Q5M7Z0 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
RNFT1Q5M7Z0 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC15.84■□□□□ 0.13
RNFT1Q5M7Z0 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC15.84■□□□□ 0.13
RNFT1Q5M7Z0 NCF1C-201ENST00000438382 1427 ntBASIC15.84■□□□□ 0.13
RNFT1Q5M7Z0 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
RNFT1Q5M7Z0 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC15.84■□□□□ 0.13
RNFT1Q5M7Z0 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC15.84■□□□□ 0.13
RNFT1Q5M7Z0 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
RNFT1Q5M7Z0 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
RNFT1Q5M7Z0 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC15.83■□□□□ 0.13
RNFT1Q5M7Z0 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.13
RNFT1Q5M7Z0 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC15.83■□□□□ 0.13
RNFT1Q5M7Z0 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
RNFT1Q5M7Z0 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.13
RNFT1Q5M7Z0 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.13
RNFT1Q5M7Z0 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
RNFT1Q5M7Z0 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC15.83■□□□□ 0.13
RNFT1Q5M7Z0 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
RNFT1Q5M7Z0 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
RNFT1Q5M7Z0 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC15.83■□□□□ 0.12
RNFT1Q5M7Z0 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
RNFT1Q5M7Z0 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC15.83■□□□□ 0.12
RNFT1Q5M7Z0 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
RNFT1Q5M7Z0 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
RNFT1Q5M7Z0 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
RNFT1Q5M7Z0 YBX2P1-201ENST00000394192 760 ntBASIC15.83■□□□□ 0.12
RNFT1Q5M7Z0 FIS1-203ENST00000442303 631 ntTSL 3 BASIC15.83■□□□□ 0.12
RNFT1Q5M7Z0 STK19B-204ENST00000512515 211 ntBASIC15.83■□□□□ 0.12
RNFT1Q5M7Z0 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC15.83■□□□□ 0.12
RNFT1Q5M7Z0 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC15.83■□□□□ 0.12
RNFT1Q5M7Z0 AC040169.1-201ENST00000565382 521 ntBASIC15.83■□□□□ 0.12
RNFT1Q5M7Z0 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC15.83■□□□□ 0.12
RNFT1Q5M7Z0 AC064836.3-201ENST00000607928 673 ntBASIC15.83■□□□□ 0.12
RNFT1Q5M7Z0 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC15.83■□□□□ 0.12
RNFT1Q5M7Z0 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
RNFT1Q5M7Z0 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC15.83■□□□□ 0.12
RNFT1Q5M7Z0 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC15.83■□□□□ 0.12
RNFT1Q5M7Z0 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
RNFT1Q5M7Z0 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
RNFT1Q5M7Z0 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC15.83■□□□□ 0.12
RNFT1Q5M7Z0 KRT18P55-202ENST00000578578 1546 ntBASIC15.83■□□□□ 0.12
RNFT1Q5M7Z0 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC15.83■□□□□ 0.12
RNFT1Q5M7Z0 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC15.83■□□□□ 0.12
RNFT1Q5M7Z0 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
RNFT1Q5M7Z0 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
RNFT1Q5M7Z0 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 RPSAP43-201ENST00000402237 625 ntBASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 UPF3AP3-201ENST00000420996 769 ntBASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 SLC4A1APP2-201ENST00000424054 1259 ntBASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 IGHV3-52-201ENST00000519770 353 ntBASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 FLJ13224-201ENST00000313737 1514 ntBASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 AC009336.1-201ENST00000608941 1553 ntBASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RNFT1Q5M7Z0 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
RNFT1Q5M7Z0 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC15.81■□□□□ 0.12
RNFT1Q5M7Z0 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RNFT1Q5M7Z0 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RNFT1Q5M7Z0 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
RNFT1Q5M7Z0 BEX3-201ENST00000361298 921 ntTSL 2 BASIC15.81■□□□□ 0.12
RNFT1Q5M7Z0 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
RNFT1Q5M7Z0 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC15.81■□□□□ 0.12
RNFT1Q5M7Z0 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms