Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC60Q8IWA6 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
CCDC60Q8IWA6 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC19.64■□□□□ 0.73
CCDC60Q8IWA6 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC60Q8IWA6 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 REXO1L11P-201ENST00000620964 1927 ntBASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 HLA-J-201ENST00000462773 1622 ntBASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 PRYP5-201ENST00000451909 266 ntBASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 CYB561-217ENST00000582997 877 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 STK25P1-201ENST00000585406 838 ntBASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
CCDC60Q8IWA6 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 AC003669.1-201ENST00000334569 611 ntBASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 LAGE3P1-201ENST00000425356 484 ntBASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 AC002558.1-201ENST00000488906 803 ntBASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 RPL18-209ENST00000550645 463 ntTSL 5 BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 RPL18-214ENST00000552588 559 ntTSL 3 BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 SDCCAG3P1-201ENST00000589292 1150 ntBASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 COPE-211ENST00000600932 1144 ntTSL 5 BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC60Q8IWA6 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC60Q8IWA6 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC19.61■□□□□ 0.73
CCDC60Q8IWA6 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC60Q8IWA6 AP002414.3-201ENST00000589352 1468 ntBASIC19.61■□□□□ 0.73
CCDC60Q8IWA6 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
CCDC60Q8IWA6 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC60Q8IWA6 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
CCDC60Q8IWA6 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC60Q8IWA6 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC60Q8IWA6 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC19.61■□□□□ 0.73
CCDC60Q8IWA6 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC19.61■□□□□ 0.73
CCDC60Q8IWA6 CENPM-204ENST00000402420 688 ntTSL 5 BASIC19.61■□□□□ 0.73
CCDC60Q8IWA6 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC19.61■□□□□ 0.73
CCDC60Q8IWA6 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
CCDC60Q8IWA6 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms