Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
HMGB1P09429 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGB1P09429 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
HMGB1P09429 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGB1P09429 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC20.88■□□□□ 0.93
HMGB1P09429 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGB1P09429 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HMGB1P09429 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HMGB1P09429 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC20.87■□□□□ 0.93
HMGB1P09429 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC20.87■□□□□ 0.93
HMGB1P09429 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
HMGB1P09429 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HMGB1P09429 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HMGB1P09429 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HMGB1P09429 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HMGB1P09429 KRT18P1-202ENST00000452408 1331 ntBASIC20.87■□□□□ 0.93
HMGB1P09429 AL023806.1-201ENST00000603994 1649 ntBASIC20.87■□□□□ 0.93
HMGB1P09429 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HMGB1P09429 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HMGB1P09429 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HMGB1P09429 KRT18P35-201ENST00000510488 1269 ntBASIC20.87■□□□□ 0.93
HMGB1P09429 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC20.87■□□□□ 0.93
HMGB1P09429 AC009533.2-201ENST00000543664 586 ntBASIC20.87■□□□□ 0.93
HMGB1P09429 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC20.87■□□□□ 0.93
HMGB1P09429 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC20.87■□□□□ 0.93
HMGB1P09429 AC091076.1-201ENST00000610741 619 ntBASIC20.87■□□□□ 0.93
HMGB1P09429 CEP83-AS1-201ENST00000623122 2482 ntBASIC20.87■□□□□ 0.93
HMGB1P09429 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC20.87■□□□□ 0.93
HMGB1P09429 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC20.87■□□□□ 0.93
HMGB1P09429 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC20.87■□□□□ 0.93
HMGB1P09429 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
HMGB1P09429 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
HMGB1P09429 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HMGB1P09429 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HMGB1P09429 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC20.87■□□□□ 0.93
HMGB1P09429 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC20.87■□□□□ 0.93
HMGB1P09429 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HMGB1P09429 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
HMGB1P09429 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HMGB1P09429 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HMGB1P09429 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HMGB1P09429 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HMGB1P09429 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HMGB1P09429 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC20.86■□□□□ 0.93
HMGB1P09429 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
HMGB1P09429 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HMGB1P09429 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC20.86■□□□□ 0.93
HMGB1P09429 AC141586.5-201ENST00000624546 2050 ntBASIC20.86■□□□□ 0.93
HMGB1P09429 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HMGB1P09429 CCS-201ENST00000310190 942 ntTSL 5 BASIC20.86■□□□□ 0.93
HMGB1P09429 MYCLP1-201ENST00000372451 1075 ntBASIC20.86■□□□□ 0.93
HMGB1P09429 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
HMGB1P09429 MEG3-211ENST00000452514 461 ntTSL 3 BASIC20.86■□□□□ 0.93
HMGB1P09429 ABR-204ENST00000543210 1049 ntTSL 2 BASIC20.86■□□□□ 0.93
HMGB1P09429 ABR-217ENST00000572441 563 ntTSL 4 BASIC20.86■□□□□ 0.93
HMGB1P09429 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
HMGB1P09429 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
HMGB1P09429 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC20.86■□□□□ 0.93
HMGB1P09429 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC20.86■□□□□ 0.93
HMGB1P09429 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HMGB1P09429 SIRPAP1-201ENST00000448467 1770 ntBASIC20.86■□□□□ 0.93
HMGB1P09429 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC20.86■□□□□ 0.93
HMGB1P09429 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HMGB1P09429 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC20.86■□□□□ 0.93
HMGB1P09429 AC139713.2-201ENST00000641328 2723 ntBASIC20.86■□□□□ 0.93
HMGB1P09429 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
HMGB1P09429 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC20.86■□□□□ 0.93
HMGB1P09429 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC20.86■□□□□ 0.93
HMGB1P09429 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
HMGB1P09429 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HMGB1P09429 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HMGB1P09429 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HMGB1P09429 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC20.86■□□□□ 0.93
HMGB1P09429 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
HMGB1P09429 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
HMGB1P09429 AL645608.8-201ENST00000606034 2086 ntBASIC20.85■□□□□ 0.93
HMGB1P09429 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HMGB1P09429 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC20.85■□□□□ 0.93
HMGB1P09429 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC20.85■□□□□ 0.93
HMGB1P09429 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HMGB1P09429 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HMGB1P09429 TPR-209ENST00000613151 2478 ntTSL 5 BASIC20.85■□□□□ 0.93
HMGB1P09429 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HMGB1P09429 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC20.85■□□□□ 0.93
HMGB1P09429 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HMGB1P09429 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HMGB1P09429 FAM220CP-201ENST00000395253 831 ntBASIC20.85■□□□□ 0.93
HMGB1P09429 AC103564.2-201ENST00000432853 1299 ntBASIC20.85■□□□□ 0.93
HMGB1P09429 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HMGB1P09429 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC20.85■□□□□ 0.93
HMGB1P09429 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC20.85■□□□□ 0.93
HMGB1P09429 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HMGB1P09429 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC20.85■□□□□ 0.93
HMGB1P09429 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC20.85■□□□□ 0.93
HMGB1P09429 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HMGB1P09429 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
HMGB1P09429 AC233702.3-201ENST00000578656 1387 ntBASIC20.85■□□□□ 0.93
HMGB1P09429 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
HMGB1P09429 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HMGB1P09429 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms