Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
RAPGEF3O95398 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC26.3■■□□□ 1.8
RAPGEF3O95398 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC26.3■■□□□ 1.8
RAPGEF3O95398 AL358472.5-202ENST00000641448 1267 ntBASIC26.3■■□□□ 1.8
RAPGEF3O95398 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
RAPGEF3O95398 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
RAPGEF3O95398 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
RAPGEF3O95398 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
RAPGEF3O95398 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC26.29■■□□□ 1.8
RAPGEF3O95398 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
RAPGEF3O95398 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
RAPGEF3O95398 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
RAPGEF3O95398 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC26.29■■□□□ 1.8
RAPGEF3O95398 SPCS2P4-201ENST00000436160 681 ntBASIC26.29■■□□□ 1.8
RAPGEF3O95398 RN7SL589P-201ENST00000481268 310 ntBASIC26.29■■□□□ 1.8
RAPGEF3O95398 AL158211.3-201ENST00000607385 239 ntBASIC26.29■■□□□ 1.8
RAPGEF3O95398 BSG-214ENST00000614867 960 ntTSL 3 BASIC26.29■■□□□ 1.8
RAPGEF3O95398 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC26.29■■□□□ 1.8
RAPGEF3O95398 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC26.29■■□□□ 1.8
RAPGEF3O95398 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC26.29■■□□□ 1.8
RAPGEF3O95398 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
RAPGEF3O95398 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
RAPGEF3O95398 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC26.29■■□□□ 1.8
RAPGEF3O95398 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC26.29■■□□□ 1.8
RAPGEF3O95398 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
RAPGEF3O95398 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
RAPGEF3O95398 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
RAPGEF3O95398 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
RAPGEF3O95398 HARS-201ENST00000307633 1780 ntTSL 2 BASIC26.28■■□□□ 1.8
RAPGEF3O95398 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC26.28■■□□□ 1.8
RAPGEF3O95398 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
RAPGEF3O95398 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
RAPGEF3O95398 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC26.28■■□□□ 1.8
RAPGEF3O95398 ARSEP1-201ENST00000420443 635 ntBASIC26.28■■□□□ 1.8
RAPGEF3O95398 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC26.28■■□□□ 1.8
RAPGEF3O95398 RN7SL692P-201ENST00000464677 288 ntBASIC26.28■■□□□ 1.8
RAPGEF3O95398 SLC25A6P2-201ENST00000497974 877 ntBASIC26.28■■□□□ 1.8
RAPGEF3O95398 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
RAPGEF3O95398 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC26.28■■□□□ 1.8
RAPGEF3O95398 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC26.28■■□□□ 1.8
RAPGEF3O95398 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
RAPGEF3O95398 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC26.28■■□□□ 1.8
RAPGEF3O95398 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC26.28■■□□□ 1.8
RAPGEF3O95398 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
RAPGEF3O95398 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
RAPGEF3O95398 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
RAPGEF3O95398 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
RAPGEF3O95398 MRPS18AP1-201ENST00000414458 589 ntBASIC26.27■■□□□ 1.8
RAPGEF3O95398 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
RAPGEF3O95398 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC26.27■■□□□ 1.8
RAPGEF3O95398 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
RAPGEF3O95398 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
RAPGEF3O95398 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC26.27■■□□□ 1.8
RAPGEF3O95398 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
RAPGEF3O95398 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
RAPGEF3O95398 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
RAPGEF3O95398 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC26.27■■□□□ 1.8
RAPGEF3O95398 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
RAPGEF3O95398 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
RAPGEF3O95398 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
RAPGEF3O95398 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
RAPGEF3O95398 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
RAPGEF3O95398 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC26.26■■□□□ 1.79
RAPGEF3O95398 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC26.26■■□□□ 1.79
RAPGEF3O95398 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC26.26■■□□□ 1.79
RAPGEF3O95398 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC26.26■■□□□ 1.79
RAPGEF3O95398 AC092580.3-201ENST00000430932 139 ntBASIC26.26■■□□□ 1.79
RAPGEF3O95398 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC26.26■■□□□ 1.79
RAPGEF3O95398 AL512638.1-201ENST00000457493 794 ntBASIC26.26■■□□□ 1.79
RAPGEF3O95398 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
RAPGEF3O95398 COQ6-210ENST00000554920 649 ntTSL 3 BASIC26.26■■□□□ 1.79
RAPGEF3O95398 LINC01225-203ENST00000563550 1244 ntBASIC26.26■■□□□ 1.79
RAPGEF3O95398 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC26.26■■□□□ 1.79
RAPGEF3O95398 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
RAPGEF3O95398 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
RAPGEF3O95398 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
RAPGEF3O95398 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC26.25■■□□□ 1.79
RAPGEF3O95398 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
RAPGEF3O95398 ANO7L1-203ENST00000602586 1720 ntBASIC26.25■■□□□ 1.79
RAPGEF3O95398 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC26.25■■□□□ 1.79
RAPGEF3O95398 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
RAPGEF3O95398 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC26.25■■□□□ 1.79
RAPGEF3O95398 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
RAPGEF3O95398 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
RAPGEF3O95398 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC26.25■■□□□ 1.79
RAPGEF3O95398 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
RAPGEF3O95398 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
RAPGEF3O95398 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
RAPGEF3O95398 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
RAPGEF3O95398 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
RAPGEF3O95398 ATP5G2P4-201ENST00000442175 420 ntBASIC26.25■■□□□ 1.79
RAPGEF3O95398 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC26.25■■□□□ 1.79
RAPGEF3O95398 AC027307.3-201ENST00000594262 1100 ntBASIC26.25■■□□□ 1.79
RAPGEF3O95398 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC26.25■■□□□ 1.79
RAPGEF3O95398 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
RAPGEF3O95398 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
RAPGEF3O95398 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC26.25■■□□□ 1.79
RAPGEF3O95398 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
RAPGEF3O95398 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
RAPGEF3O95398 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC26.25■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms