RNA–Protein interactions for RNA: ENST00000563941.5

MSLN-205, Transcript of mesothelin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MSLN, Length 2,109 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSLN-205ENST00000563941 NISCHQ9Y2I1 1504 aa42.17■■■■■ 4.34
MSLN-205ENST00000563941 CCDC180Q9P1Z9 1646 aa36.07■■■■□ 3.36
MSLN-205ENST00000563941 ZCCHC6Q5VYS8 1495 aaKnown RBP35.66■■■■□ 3.3
MSLN-205ENST00000563941 SHROOM4Q9ULL8 1493 aa35.6■■■■□ 3.29
MSLN-205ENST00000563941 SUPT5HO00267 1087 aaKnown RBP34.82■■■■□ 3.16
MSLN-205ENST00000563941 DCAF8L2P0C7V8 631 aa34.75■■■■□ 3.15
MSLN-205ENST00000563941 DCAF1Q9Y4B6 1507 aa34.7■■■■□ 3.15
MSLN-205ENST00000563941 CHIC1Q5VXU3 224 aa33.85■■■■□ 3.01
MSLN-205ENST00000563941 MYO15BQ96JP2 1530 aa33.78■■■■□ 3
MSLN-205ENST00000563941 ABCC9O60706 1549 aa33.64■■■□□ 2.98
MSLN-205ENST00000563941 SCRIBQ14160 1630 aa33.62■■■□□ 2.97
MSLN-205ENST00000563941 NACADO15069 1562 aa33.33■■■□□ 2.93
MSLN-205ENST00000563941 RSF1Q96T23 1441 aaPredicted RBP33.25■■■□□ 2.91
MSLN-205ENST00000563941 RB1CC1Q8TDY2 1594 aa32.93■■■□□ 2.86
MSLN-205ENST00000563941 CECR2Q9BXF3 1484 aa32.82■■■□□ 2.84
MSLN-205ENST00000563941 LOC105371045A0A1W2PR82 267 aa32.75■■■□□ 2.83
MSLN-205ENST00000563941 MROH2BQ7Z745 1585 aa32.73■■■□□ 2.83
MSLN-205ENST00000563941 WIZO95785 1651 aa32.57■■■□□ 2.8
MSLN-205ENST00000563941 PCGF6Q9BYE7 350 aa32.54■■■□□ 2.8
MSLN-205ENST00000563941 TRIM41Q8WV44 630 aa32.51■■■□□ 2.8
MSLN-205ENST00000563941 HRCP23327 699 aa32.5■■■□□ 2.79
MSLN-205ENST00000563941 BAZ1AQ9NRL2 1556 aaPredicted RBP32.43■■■□□ 2.78
MSLN-205ENST00000563941 UNC13AQ9UPW8 1703 aa32.35■■■□□ 2.77
MSLN-205ENST00000563941 SMARCA4P51532 1647 aa32.18■■■□□ 2.74
MSLN-205ENST00000563941 FAM9AQ8IZU1 332 aaPredicted RBP32.15■■■□□ 2.74
MSLN-205ENST00000563941 EIF4G1Q04637 1599 aaKnown RBP32.13■■■□□ 2.73
MSLN-205ENST00000563941 TOP2AP11388 1531 aaKnown RBP32.12■■■□□ 2.73
MSLN-205ENST00000563941 TRIM26Q12899 539 aaPredicted RBP32.06■■■□□ 2.72
MSLN-205ENST00000563941 BICRAQ9NZM4 1560 aa31.94■■■□□ 2.7
MSLN-205ENST00000563941 SMARCA2P51531 1590 aa31.91■■■□□ 2.7
MSLN-205ENST00000563941 CCDC88BA6NC98 1476 aa31.89■■■□□ 2.7
MSLN-205ENST00000563941 PABPN1Q86U42 306 aaKnown RBP eCLIP31.86■■■□□ 2.69
MSLN-205ENST00000563941 EHMT2Q96KQ7 1210 aa31.8■■■□□ 2.68
MSLN-205ENST00000563941 PPARGC1BQ86YN6 1023 aaKnown RBP31.74■■■□□ 2.67
MSLN-205ENST00000563941 ABCC8Q09428 1581 aa31.73■■■□□ 2.67
MSLN-205ENST00000563941 PEG3Q9GZU2 1588 aa31.62■■■□□ 2.65
MSLN-205ENST00000563941 SOGA1O94964 1423 aa31.36■■■□□ 2.61
MSLN-205ENST00000563941 ATAD2BQ9ULI0 1458 aa31.35■■■□□ 2.61
MSLN-205ENST00000563941 ZEB1P37275 1124 aaPredicted RBP31.32■■■□□ 2.6
MSLN-205ENST00000563941 EEA1Q15075 1411 aa31.31■■■□□ 2.6
MSLN-205ENST00000563941 BAZ1BQ9UIG0 1483 aaKnown RBP31.26■■■□□ 2.59
MSLN-205ENST00000563941 WRNQ14191 1432 aaPredicted RBP eCLIP31.25■■■□□ 2.59
MSLN-205ENST00000563941 RUSC2Q8N2Y8 1516 aa31.21■■■□□ 2.59
MSLN-205ENST00000563941 CEP162Q5TB80 1403 aa31.18■■■□□ 2.58
MSLN-205ENST00000563941 CSRNP3Q8WYN3 585 aa31.18■■■□□ 2.58
MSLN-205ENST00000563941 TNIKQ9UKE5 1360 aa31.17■■■□□ 2.58
MSLN-205ENST00000563941 SYNJ1O43426 1573 aa31.13■■■□□ 2.57
MSLN-205ENST00000563941 GOLGA3Q08378 1498 aa31.05■■■□□ 2.56
MSLN-205ENST00000563941 UBTFP17480 764 aaKnown RBP30.98■■■□□ 2.55
MSLN-205ENST00000563941 KIF21BO75037 1637 aa30.91■■■□□ 2.54
MSLN-205ENST00000563941 CEP164Q9UPV0 1460 aa30.9■■■□□ 2.54
MSLN-205ENST00000563941 HMGXB3Q12766 1538 aa30.84■■■□□ 2.53
MSLN-205ENST00000563941 TOP2BQ02880 1626 aa30.81■■■□□ 2.52
MSLN-205ENST00000563941 NCAPD3P42695 1498 aa30.79■■■□□ 2.52
MSLN-205ENST00000563941 TTBK1Q5TCY1 1321 aaPredicted RBP30.76■■■□□ 2.51
MSLN-205ENST00000563941 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.74■■■□□ 2.51
MSLN-205ENST00000563941 BIVM-ERCC5R4GMW8 1640 aa30.74■■■□□ 2.51
MSLN-205ENST00000563941 CCER1Q8TC90 406 aaPredicted RBP30.68■■■□□ 2.5
MSLN-205ENST00000563941 CLIP1P30622 1438 aa30.64■■■□□ 2.5
MSLN-205ENST00000563941 RAPGEF2Q9Y4G8 1499 aa30.64■■■□□ 2.5
MSLN-205ENST00000563941 VPS8Q8N3P4 1428 aa30.51■■■□□ 2.48
MSLN-205ENST00000563941 CUX1P39880 1505 aa30.5■■■□□ 2.47
MSLN-205ENST00000563941 CFTRP13569 1480 aa30.49■■■□□ 2.47
MSLN-205ENST00000563941 ERICH3Q5RHP9 1530 aa30.45■■■□□ 2.47
MSLN-205ENST00000563941 PRXQ9BXM0 1461 aa30.41■■■□□ 2.46
MSLN-205ENST00000563941 PRDM2Q13029 1718 aa30.38■■■□□ 2.45
MSLN-205ENST00000563941 CC2D2AQ9P2K1 1620 aa30.34■■■□□ 2.45
MSLN-205ENST00000563941 KIF27Q86VH2 1401 aa30.31■■■□□ 2.44
MSLN-205ENST00000563941 RANGAP1P46060 587 aaPredicted RBP30.31■■■□□ 2.44
MSLN-205ENST00000563941 APLP2Q06481 763 aa30.28■■■□□ 2.44
MSLN-205ENST00000563941 ARAP1Q96P48 1450 aa30.2■■■□□ 2.42
MSLN-205ENST00000563941 HNRNPUL2Q1KMD3 747 aaKnown RBP30.15■■■□□ 2.42
MSLN-205ENST00000563941 CADPSQ9ULU8 1353 aa30.15■■■□□ 2.42
MSLN-205ENST00000563941 CUX2O14529 1486 aa30.03■■■□□ 2.4
MSLN-205ENST00000563941 FGD5Q6ZNL6 1462 aa29.98■■■□□ 2.39
MSLN-205ENST00000563941 DIEXFQ68CQ4 756 aaKnown RBP29.98■■■□□ 2.39
MSLN-205ENST00000563941 ARHGAP35Q9NRY4 1499 aa29.96■■■□□ 2.39
MSLN-205ENST00000563941 IGF1RP08069 1367 aa29.95■■■□□ 2.39
MSLN-205ENST00000563941 KANK4Q5T7N3 995 aaPredicted RBP29.9■■■□□ 2.38
MSLN-205ENST00000563941 FANCD2Q9BXW9 1451 aa29.87■■■□□ 2.37
MSLN-205ENST00000563941 ZNF316A6NFI3 1004 aaPredicted RBP29.84■■■□□ 2.37
MSLN-205ENST00000563941 CARMIL1Q5VZK9 1371 aa29.83■■■□□ 2.37
MSLN-205ENST00000563941 RRBP1Q9P2E9 1410 aaKnown RBP29.78■■■□□ 2.36
MSLN-205ENST00000563941 DNMBPQ6XZF7 1577 aa29.77■■■□□ 2.36
MSLN-205ENST00000563941 SCAF1Q9H7N4 1312 aaKnown RBP29.76■■■□□ 2.35
MSLN-205ENST00000563941 TOPBP1Q92547 1522 aa29.68■■■□□ 2.34
MSLN-205ENST00000563941 NESP48681 1621 aa29.67■■■□□ 2.34
MSLN-205ENST00000563941 ABCA10Q8WWZ4 1543 aa29.66■■■□□ 2.34
MSLN-205ENST00000563941 DHX57Q6P158 1386 aaKnown RBP29.65■■■□□ 2.34
MSLN-205ENST00000563941 TIAM1Q13009 1591 aa29.65■■■□□ 2.34
MSLN-205ENST00000563941 MAP3K1Q13233 1512 aa29.65■■■□□ 2.34
MSLN-205ENST00000563941 POLA1P09884 1462 aaPredicted RBP29.65■■■□□ 2.34
MSLN-205ENST00000563941 RAD54L2Q9Y4B4 1467 aa29.65■■■□□ 2.34
MSLN-205ENST00000563941 CLSPNQ9HAW4 1339 aa29.64■■■□□ 2.33
MSLN-205ENST00000563941 CCNB3Q8WWL7 1395 aa29.63■■■□□ 2.33
MSLN-205ENST00000563941 ACIN1Q9UKV3 1341 aaKnown RBP29.6■■■□□ 2.33
MSLN-205ENST00000563941 LAMC3Q9Y6N6 1575 aa29.6■■■□□ 2.33
MSLN-205ENST00000563941 DNAJC5BQ9UF47 199 aa29.59■■■□□ 2.33
MSLN-205ENST00000563941 NEUROD1Q13562 356 aa29.54■■■□□ 2.32
MSLN-205ENST00000563941 CUL7Q14999 1698 aa29.54■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms