Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 RCN1P2-201ENST00000398357 915 ntBASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 TPM1-218ENST00000559281 851 ntTSL 5 BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 LINC01711-201ENST00000598340 967 ntBASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
TRIM39Q9HCM9 AC020916.1-201ENST00000587762 1774 ntBASIC17.58■□□□□ 0.41
TRIM39Q9HCM9 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRIM39Q9HCM9 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRIM39Q9HCM9 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRIM39Q9HCM9 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRIM39Q9HCM9 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.58■□□□□ 0.41
TRIM39Q9HCM9 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRIM39Q9HCM9 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
TRIM39Q9HCM9 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
TRIM39Q9HCM9 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRIM39Q9HCM9 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRIM39Q9HCM9 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRIM39Q9HCM9 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRIM39Q9HCM9 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM39Q9HCM9 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM39Q9HCM9 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM39Q9HCM9 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM39Q9HCM9 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM39Q9HCM9 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM39Q9HCM9 AC007967.3-201ENST00000434308 558 ntBASIC17.58■□□□□ 0.4
TRIM39Q9HCM9 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC17.58■□□□□ 0.4
TRIM39Q9HCM9 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM39Q9HCM9 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC17.58■□□□□ 0.4
TRIM39Q9HCM9 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC17.58■□□□□ 0.4
TRIM39Q9HCM9 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM39Q9HCM9 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC17.58■□□□□ 0.4
TRIM39Q9HCM9 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM39Q9HCM9 AL732292.2-201ENST00000609649 430 ntBASIC17.58■□□□□ 0.4
TRIM39Q9HCM9 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC17.58■□□□□ 0.4
TRIM39Q9HCM9 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM39Q9HCM9 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM39Q9HCM9 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.58■□□□□ 0.4
TRIM39Q9HCM9 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM39Q9HCM9 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.58■□□□□ 0.4
TRIM39Q9HCM9 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM39Q9HCM9 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM39Q9HCM9 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 INTS4P1-201ENST00000438455 1935 ntBASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 AC111152.3-201ENST00000569699 673 ntBASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 AL591684.3-201ENST00000605187 298 ntBASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 NOC2LP1-202ENST00000452600 2235 ntBASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
TRIM39Q9HCM9 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms