Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 AKAP1-219ENST00000621116 4285 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.445e-8■□□□□ 9.3
DDX55Q8NHQ9 AKAP1-203ENST00000481416 4089 ntTSL 510.65□□□□□ -0.75e-8■□□□□ 9.3
DDX55Q8NHQ9 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.51e-6■□□□□ 9.3
DDX55Q8NHQ9 RCC1-204ENST00000398958 2715 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.461e-6■□□□□ 9.3
DDX55Q8NHQ9 RCC1-203ENST00000373833 2844 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.51e-6■□□□□ 9.3
DDX55Q8NHQ9 MST1-204ENST00000479115 2285 ntTSL 523.32■■□□□ 1.323e-6■□□□□ 9.3
DDX55Q8NHQ9 MST1-215ENST00000492329 2006 ntTSL 521.24■□□□□ 0.993e-6■□□□□ 9.3
DDX55Q8NHQ9 MST1-217ENST00000493836 923 ntTSL 217.02■□□□□ 0.323e-6■□□□□ 9.3
DDX55Q8NHQ9 MST1-201ENST00000448220 667 ntTSL 515.49■□□□□ 0.073e-6■□□□□ 9.3
DDX55Q8NHQ9 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.043e-6■□□□□ 9.3
DDX55Q8NHQ9 MST1-211ENST00000488350 4152 ntTSL 515.17■□□□□ 0.023e-6■□□□□ 9.3
DDX55Q8NHQ9 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.776e-7■□□□□ 9.3
DDX55Q8NHQ9 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.26e-7■□□□□ 9.3
DDX55Q8NHQ9 ERBB3-201ENST00000267101 5919 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.55e-7■□□□□ 9.3
DDX55Q8NHQ9 FCGRT-212ENST00000598319 1888 ntTSL 519.24■□□□□ 0.672e-7■□□□□ 9.3
DDX55Q8NHQ9 MRPL4-211ENST00000592514 1118 ntAPPRIS ALT2 TSL 528.37■■■□□ 2.131e-25■□□□□ 9.3
DDX55Q8NHQ9 ALB-203ENST00000415165 1483 ntTSL 1 (best) BASIC8.37□□□□□ -1.071e-323■□□□□ 9.3
DDX55Q8NHQ9 ALB-220ENST00000621628 1606 ntTSL 5 BASIC6.84□□□□□ -1.311e-323■□□□□ 9.3
DDX55Q8NHQ9 ALB-209ENST00000503124 1741 ntTSL 5 BASIC6.84□□□□□ -1.311e-323■□□□□ 9.3
DDX55Q8NHQ9 ALB-208ENST00000495173 445 ntTSL 36.75□□□□□ -1.331e-323■□□□□ 9.3
DDX55Q8NHQ9 ALB-211ENST00000505649 1509 ntTSL 56.3□□□□□ -1.41e-323■□□□□ 9.3
DDX55Q8NHQ9 ALB-205ENST00000476441 1604 ntTSL 56.13□□□□□ -1.431e-323■□□□□ 9.3
DDX55Q8NHQ9 ALB-216ENST00000511370 1519 ntTSL 56.12□□□□□ -1.431e-323■□□□□ 9.3
DDX55Q8NHQ9 ALB-219ENST00000621085 1418 ntTSL 5 BASIC6.08□□□□□ -1.441e-323■□□□□ 9.3
DDX55Q8NHQ9 ALB-202ENST00000401494 1659 ntTSL 5 BASIC5.98□□□□□ -1.451e-323■□□□□ 9.3
DDX55Q8NHQ9 ALB-214ENST00000509063 1911 ntTSL 5 BASIC5.86□□□□□ -1.471e-323■□□□□ 9.3
DDX55Q8NHQ9 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.591e-323■□□□□ 9.3
DDX55Q8NHQ9 ALB-213ENST00000508932 369 ntTSL 32.5□□□□□ -2.011e-323■□□□□ 9.3
DDX55Q8NHQ9 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC27.45■■□□□ 1.992e-24■□□□□ 9.3
DDX55Q8NHQ9 EBP-206ENST00000498425 796 ntTSL 318.19■□□□□ 0.55e-11■□□□□ 9.3
DDX55Q8NHQ9 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC23.56■■□□□ 1.363e-45■□□□□ 9.3
DDX55Q8NHQ9 TNPO3-205ENST00000627585 4514 ntTSL 2 BASIC9.86□□□□□ -0.833e-7■□□□□ 9.3
DDX55Q8NHQ9 TNPO3-201ENST00000265388 4153 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.023e-7■□□□□ 9.3
DDX55Q8NHQ9 HSP90AB1-202ENST00000371554 2674 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.61e-323■□□□□ 9.3
DDX55Q8NHQ9 HSP90AB1-203ENST00000371646 2572 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.721e-323■□□□□ 9.3
DDX55Q8NHQ9 HSP90AB1-204ENST00000620073 2644 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.771e-323■□□□□ 9.3
DDX55Q8NHQ9 HSP90AB1-201ENST00000353801 2582 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.821e-323■□□□□ 9.3
DDX55Q8NHQ9 FCGRT-218ENST00000600273 582 ntTSL 221.26■□□□□ 0.993e-7■□□□□ 9.3
DDX55Q8NHQ9 FCGRT-215ENST00000598936 870 ntTSL 320.92■□□□□ 0.943e-7■□□□□ 9.3
DDX55Q8NHQ9 FCGRT-216ENST00000599701 579 ntTSL 219.21■□□□□ 0.673e-7■□□□□ 9.3
DDX55Q8NHQ9 FCGRT-207ENST00000595677 714 ntTSL 518.13■□□□□ 0.493e-7■□□□□ 9.3
DDX55Q8NHQ9 FCGRT-213ENST00000598491 578 ntTSL 518.02■□□□□ 0.483e-7■□□□□ 9.3
DDX55Q8NHQ9 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC28.06■■■□□ 2.081e-19■□□□□ 9.3
DDX55Q8NHQ9 PPDPF-204ENST00000473620 478 ntTSL 223.45■■□□□ 1.341e-7■□□□□ 9.3
DDX55Q8NHQ9 CTDSP1-207ENST00000473420 922 ntTSL 322.71■■□□□ 1.231e-6■□□□□ 9.3
DDX55Q8NHQ9 PPDPF-203ENST00000464438 373 ntTSL 222.65■■□□□ 1.221e-7■□□□□ 9.3
DDX55Q8NHQ9 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC22.47■■□□□ 1.191e-7■□□□□ 9.3
DDX55Q8NHQ9 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.189e-12■□□□□ 9.3
DDX55Q8NHQ9 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC21.79■■□□□ 1.081e-19■□□□□ 9.3
DDX55Q8NHQ9 NFKBIA-207ENST00000557100 825 ntTSL 321.43■■□□□ 1.021e-7■□□□□ 9.3
DDX55Q8NHQ9 CTDSP1-215ENST00000498160 877 ntTSL 520.74■□□□□ 0.911e-6■□□□□ 9.3
DDX55Q8NHQ9 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC20.67■□□□□ 0.91e-7■□□□□ 9.3
DDX55Q8NHQ9 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC20.33■□□□□ 0.851e-6■□□□□ 9.3
DDX55Q8NHQ9 TMC6-222ENST00000592076 693 ntTSL 319.83■□□□□ 0.771e-19■□□□□ 9.3
DDX55Q8NHQ9 CTDSP1-214ENST00000497677 998 ntTSL 219.5■□□□□ 0.711e-6■□□□□ 9.3
DDX55Q8NHQ9 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC19.24■□□□□ 0.672e-9■□□□□ 9.3
DDX55Q8NHQ9 CTDSP1-205ENST00000452977 818 ntTSL 519.16■□□□□ 0.661e-6■□□□□ 9.3
DDX55Q8NHQ9 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.631e-19■□□□□ 9.3
DDX55Q8NHQ9 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC18.83■□□□□ 0.61e-7■□□□□ 9.3
DDX55Q8NHQ9 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61e-19■□□□□ 9.3
DDX55Q8NHQ9 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.462e-9■□□□□ 9.3
DDX55Q8NHQ9 TMC6-224ENST00000593044 3070 ntTSL 217.69■□□□□ 0.421e-19■□□□□ 9.3
DDX55Q8NHQ9 CTDSP1-210ENST00000491064 786 ntTSL 317.37■□□□□ 0.371e-6■□□□□ 9.3
DDX55Q8NHQ9 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.361e-7■□□□□ 9.3
DDX55Q8NHQ9 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.331e-19■□□□□ 9.3
DDX55Q8NHQ9 CTDSP1-212ENST00000494067 362 ntTSL 316.61■□□□□ 0.251e-6■□□□□ 9.3
DDX55Q8NHQ9 CNTNAP1-201ENST00000264638 5276 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.021e-7■□□□□ 9.3
DDX55Q8NHQ9 TMC6-215ENST00000590494 702 ntTSL 214.12□□□□□ -0.151e-19■□□□□ 9.3
DDX55Q8NHQ9 NFKBIA-206ENST00000556664 381 ntTSL 213.84□□□□□ -0.191e-7■□□□□ 9.3
DDX55Q8NHQ9 AOC3-206ENST00000613571 3900 ntTSL 1 (best) BASIC13.77□□□□□ -0.21e-7■□□□□ 9.3
DDX55Q8NHQ9 AOC3-201ENST00000308423 4026 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.211e-7■□□□□ 9.3
DDX55Q8NHQ9 NFKBIA-204ENST00000555371 690 ntTSL 313.72□□□□□ -0.211e-7■□□□□ 9.3
DDX55Q8NHQ9 ILVBL-206ENST00000533086 4248 ntTSL 212.06□□□□□ -0.482e-9■□□□□ 9.3
DDX55Q8NHQ9 RPS4Y1-203ENST00000477725 998 ntTSL 26.86□□□□□ -1.311e-7■□□□□ 9.3
DDX55Q8NHQ9 PLIN2-205ENST00000464326 790 ntTSL 25.68□□□□□ -1.59e-12■□□□□ 9.3
DDX55Q8NHQ9 RPS4Y1-204ENST00000515575 454 ntTSL 35.35□□□□□ -1.551e-7■□□□□ 9.3
DDX55Q8NHQ9 FCGRT-203ENST00000452439 1351 ntTSL 221.53■■□□□ 1.042e-7■□□□□ 9.3
DDX55Q8NHQ9 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC17.43■□□□□ 0.384e-13■□□□□ 9.3
DDX55Q8NHQ9 PIGT-255ENST00000640175 1429 ntTSL 216.16■□□□□ 0.184e-13■□□□□ 9.3
DDX55Q8NHQ9 VWCE-201ENST00000301770 3368 ntTSL 1 (best)15.2■□□□□ 0.024e-13■□□□□ 9.3
DDX55Q8NHQ9 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.024e-13■□□□□ 9.3
DDX55Q8NHQ9 SF3B3-206ENST00000565990 967 ntTSL 215□□□□□ -0.015e-15■□□□□ 9.3
DDX55Q8NHQ9 VWCE-208ENST00000613271 3032 ntTSL 5 BASIC12.53□□□□□ -0.44e-13■□□□□ 9.3
DDX55Q8NHQ9 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.353e-6■□□□□ 9.3
DDX55Q8NHQ9 ATAD2-201ENST00000287394 5565 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.268e-7■□□□□ 9.3
DDX55Q8NHQ9 ATAD2-202ENST00000517666 4995 ntTSL 513.13□□□□□ -0.318e-7■□□□□ 9.3
DDX55Q8NHQ9 ATAD2-205ENST00000521903 5143 ntTSL 1 (best) BASIC9.24□□□□□ -0.938e-7■□□□□ 9.3
DDX55Q8NHQ9 AUP1-203ENST00000462297 457 ntTSL 311.93□□□□□ -0.59e-7■□□□□ 9.3
DDX55Q8NHQ9 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC27.05■■□□□ 1.927e-40■□□□□ 9.3
DDX55Q8NHQ9 PFN1-202ENST00000572383 539 ntTSL 321.8■■□□□ 1.084e-22■□□□□ 9.3
DDX55Q8NHQ9 SF3B2-210ENST00000530981 1080 ntTSL 511.13□□□□□ -0.638e-11■□□□□ 9.2
DDX55Q8NHQ9 SF3B2-201ENST00000322535 2903 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.688e-11■□□□□ 9.2
DDX55Q8NHQ9 SF3B2-206ENST00000528302 3254 ntTSL 5 BASIC10.11□□□□□ -0.798e-11■□□□□ 9.2
DDX55Q8NHQ9 SF3B2-216ENST00000534765 3932 ntTSL 29.8□□□□□ -0.848e-11■□□□□ 9.2
DDX55Q8NHQ9 B2M-207ENST00000559907 499 ntTSL 317.37■□□□□ 0.379e-15■□□□□ 9.2
DDX55Q8NHQ9 B2M-206ENST00000559720 1220 ntTSL 511.71□□□□□ -0.539e-15■□□□□ 9.2
DDX55Q8NHQ9 IST1-205ENST00000439924 1841 ntTSL 514.71□□□□□ -0.051e-6■□□□□ 9.2
DDX55Q8NHQ9 IST1-203ENST00000378799 4843 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.171e-6■□□□□ 9.2
DDX55Q8NHQ9 IST1-206ENST00000456820 2031 ntTSL 513.01□□□□□ -0.331e-6■□□□□ 9.2
DDX55Q8NHQ9 IST1-201ENST00000329908 2356 ntTSL 1 (best) BASIC12.67□□□□□ -0.381e-6■□□□□ 9.2
Retrieved 100 of 15,504 protein–RNA pairs in 143.8 ms