Protein–RNA interactions for Protein: P12035

KRT3, Keratin, type II cytoskeletal 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT3P12035 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
KRT3P12035 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
KRT3P12035 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC18.73■□□□□ 0.59
KRT3P12035 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
KRT3P12035 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC18.73■□□□□ 0.59
KRT3P12035 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
KRT3P12035 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
KRT3P12035 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC18.73■□□□□ 0.59
KRT3P12035 PTK2-216ENST00000519881 863 ntTSL 3 BASIC18.73■□□□□ 0.59
KRT3P12035 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC18.73■□□□□ 0.59
KRT3P12035 AC087388.1-201ENST00000571370 1112 ntBASIC18.73■□□□□ 0.59
KRT3P12035 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC18.73■□□□□ 0.59
KRT3P12035 VPS72-207ENST00000640458 689 ntTSL 5 BASIC18.73■□□□□ 0.59
KRT3P12035 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
KRT3P12035 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.73■□□□□ 0.59
KRT3P12035 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
KRT3P12035 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
KRT3P12035 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
KRT3P12035 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC18.73■□□□□ 0.59
KRT3P12035 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
KRT3P12035 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
KRT3P12035 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
KRT3P12035 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
KRT3P12035 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.73■□□□□ 0.59
KRT3P12035 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
KRT3P12035 FZD10-202ENST00000539839 3282 ntBASIC18.73■□□□□ 0.59
KRT3P12035 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
KRT3P12035 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC18.73■□□□□ 0.59
KRT3P12035 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
KRT3P12035 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
KRT3P12035 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
KRT3P12035 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
KRT3P12035 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
KRT3P12035 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.72■□□□□ 0.59
KRT3P12035 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
KRT3P12035 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
KRT3P12035 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
KRT3P12035 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC18.72■□□□□ 0.59
KRT3P12035 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC18.72■□□□□ 0.59
KRT3P12035 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
KRT3P12035 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
KRT3P12035 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
KRT3P12035 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
KRT3P12035 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
KRT3P12035 FXN-203ENST00000396366 922 ntTSL 2 BASIC18.72■□□□□ 0.59
KRT3P12035 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC18.72■□□□□ 0.59
KRT3P12035 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC18.72■□□□□ 0.59
KRT3P12035 CNP-204ENST00000472031 1019 ntTSL 2 BASIC18.72■□□□□ 0.59
KRT3P12035 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC18.72■□□□□ 0.59
KRT3P12035 KRT8P26-201ENST00000534154 1276 ntBASIC18.72■□□□□ 0.59
KRT3P12035 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
KRT3P12035 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
KRT3P12035 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
KRT3P12035 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
KRT3P12035 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
KRT3P12035 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
KRT3P12035 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
KRT3P12035 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
KRT3P12035 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
KRT3P12035 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC18.71■□□□□ 0.59
KRT3P12035 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
KRT3P12035 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
KRT3P12035 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
KRT3P12035 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
KRT3P12035 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
KRT3P12035 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC18.71■□□□□ 0.59
KRT3P12035 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
KRT3P12035 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC18.71■□□□□ 0.59
KRT3P12035 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC18.71■□□□□ 0.59
KRT3P12035 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
KRT3P12035 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC18.71■□□□□ 0.59
KRT3P12035 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC18.71■□□□□ 0.59
KRT3P12035 RN7SL606P-201ENST00000472779 293 ntBASIC18.71■□□□□ 0.59
KRT3P12035 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
KRT3P12035 AC090616.6-201ENST00000582640 721 ntBASIC18.71■□□□□ 0.59
KRT3P12035 IGHV3-41-201ENST00000613121 348 ntBASIC18.71■□□□□ 0.59
KRT3P12035 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC18.71■□□□□ 0.59
KRT3P12035 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
KRT3P12035 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
KRT3P12035 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
KRT3P12035 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.71■□□□□ 0.59
KRT3P12035 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
KRT3P12035 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
KRT3P12035 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.71■□□□□ 0.58
KRT3P12035 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC18.7■□□□□ 0.58
KRT3P12035 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
KRT3P12035 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.7■□□□□ 0.58
KRT3P12035 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
KRT3P12035 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
KRT3P12035 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
KRT3P12035 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
KRT3P12035 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
KRT3P12035 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
KRT3P12035 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.7■□□□□ 0.58
KRT3P12035 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
KRT3P12035 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
KRT3P12035 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
KRT3P12035 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
KRT3P12035 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
KRT3P12035 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms