Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC27.23■■□□□ 1.958e-6■■□□□ 12.8
UPF1Q92900 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC26.83■■□□□ 1.894e-8■■□□□ 12.8
UPF1Q92900 COMMD7-204ENST00000610160 1987 ntTSL 226.8■■□□□ 1.888e-6■■□□□ 12.8
UPF1Q92900 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC26.58■■□□□ 1.858e-6■■□□□ 12.8
UPF1Q92900 FAM3A-216ENST00000449971 1056 ntTSL 526.56■■□□□ 1.848e-6■■□□□ 12.8
UPF1Q92900 FAM3A-207ENST00000416319 1113 ntTSL 526.32■■□□□ 1.88e-6■■□□□ 12.8
UPF1Q92900 JMJD8-207ENST00000565302 1975 ntTSL 324.43■■□□□ 1.58e-6■■□□□ 12.8
UPF1Q92900 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.378e-6■■□□□ 12.8
UPF1Q92900 AAAS-216ENST00000550033 900 ntTSL 323.59■■□□□ 1.378e-6■■□□□ 12.8
UPF1Q92900 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC22.93■■□□□ 1.268e-6■■□□□ 12.8
UPF1Q92900 SIRT2-214ENST00000476771 584 ntTSL 522.82■■□□□ 1.248e-6■■□□□ 12.8
UPF1Q92900 FAM3A-218ENST00000475657 585 ntTSL 222.25■■□□□ 1.158e-6■■□□□ 12.8
UPF1Q92900 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC22.19■■□□□ 1.148e-6■■□□□ 12.8
UPF1Q92900 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC21.71■■□□□ 1.078e-6■■□□□ 12.8
UPF1Q92900 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.868e-6■■□□□ 12.8
UPF1Q92900 RUSC1-206ENST00000462780 2420 ntTSL 220.16■□□□□ 0.828e-6■■□□□ 12.8
UPF1Q92900 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC19.87■□□□□ 0.778e-6■■□□□ 12.8
UPF1Q92900 SIRT2-212ENST00000451193 556 ntTSL 419.6■□□□□ 0.738e-6■■□□□ 12.8
UPF1Q92900 ELMSAN1-209ENST00000478847 460 ntTSL 219.26■□□□□ 0.678e-6■■□□□ 12.8
UPF1Q92900 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.638e-6■■□□□ 12.8
UPF1Q92900 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.628e-6■■□□□ 12.8
UPF1Q92900 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC18.52■□□□□ 0.558e-6■■□□□ 12.8
UPF1Q92900 AAAS-212ENST00000548931 1075 ntTSL 518.42■□□□□ 0.548e-6■■□□□ 12.8
UPF1Q92900 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.58e-6■■□□□ 12.8
UPF1Q92900 ELMSAN1-206ENST00000451078 2633 ntTSL 1 (best)18.08■□□□□ 0.498e-6■■□□□ 12.8
UPF1Q92900 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.484e-6■■□□□ 12.8
UPF1Q92900 SIRT2-217ENST00000491960 619 ntTSL 417.75■□□□□ 0.438e-6■■□□□ 12.8
UPF1Q92900 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC17.68■□□□□ 0.428e-6■■□□□ 12.8
UPF1Q92900 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.418e-6■■□□□ 12.8
UPF1Q92900 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.388e-6■■□□□ 12.8
UPF1Q92900 PGAP2-234ENST00000532017 1513 ntTSL 217.33■□□□□ 0.378e-6■■□□□ 12.8
UPF1Q92900 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.368e-6■■□□□ 12.8
UPF1Q92900 AAAS-201ENST00000209873 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.198e-6■■□□□ 12.8
UPF1Q92900 ZXDC-204ENST00000515545 2635 ntTSL 1 (best)16.12■□□□□ 0.178e-6■■□□□ 12.8
UPF1Q92900 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.144e-6■■□□□ 12.8
UPF1Q92900 JMJD8-211ENST00000568313 955 ntTSL 215.42■□□□□ 0.068e-6■■□□□ 12.8
UPF1Q92900 AAAS-220ENST00000552876 2016 ntTSL 215.38■□□□□ 0.058e-6■■□□□ 12.8
UPF1Q92900 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC15.19■□□□□ 0.028e-6■■□□□ 12.8
UPF1Q92900 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.028e-6■■□□□ 12.8
UPF1Q92900 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.088e-6■■□□□ 12.8
UPF1Q92900 STARD8-205ENST00000523864 4864 ntTSL 1 (best)14.31□□□□□ -0.128e-6■■□□□ 12.8
UPF1Q92900 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.128e-6■■□□□ 12.8
UPF1Q92900 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.158e-6■■□□□ 12.8
UPF1Q92900 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.152e-6■■□□□ 12.8
UPF1Q92900 TBC1D22B-201ENST00000373491 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.158e-6■■□□□ 12.8
UPF1Q92900 ELMSAN1-205ENST00000435371 3839 ntTSL 1 (best)14.07□□□□□ -0.168e-6■■□□□ 12.8
UPF1Q92900 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC13.48□□□□□ -0.258e-6■■□□□ 12.8
UPF1Q92900 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.288e-6■■□□□ 12.8
UPF1Q92900 STARD8-203ENST00000374599 4841 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.288e-6■■□□□ 12.8
UPF1Q92900 PDHA1-206ENST00000422285 3310 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.288e-6■■□□□ 12.8
UPF1Q92900 PDHA1-212ENST00000540249 3277 ntTSL 2 BASIC13.04□□□□□ -0.328e-6■■□□□ 12.8
UPF1Q92900 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.338e-6■■□□□ 12.8
UPF1Q92900 SAMD4A-201ENST00000251091 6565 ntTSL 1 (best) BASIC12.93□□□□□ -0.348e-6■■□□□ 12.8
UPF1Q92900 AKAP8-201ENST00000269701 3670 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.398e-6■■□□□ 12.8
UPF1Q92900 PDHA1-213ENST00000545074 3391 ntAPPRIS ALT1 TSL 2 BASIC12.5□□□□□ -0.418e-6■■□□□ 12.8
UPF1Q92900 ELMSAN1-204ENST00000423556 3547 ntAPPRIS ALT2 TSL 2 BASIC12.47□□□□□ -0.418e-6■■□□□ 12.8
UPF1Q92900 AKAP8-204ENST00000598597 3071 ntTSL 1 (best)12.22□□□□□ -0.458e-6■■□□□ 12.8
UPF1Q92900 ZNF816-ZNF321P-201ENST00000391777 1252 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.538e-6■■□□□ 12.8
UPF1Q92900 PDHA1-204ENST00000379806 3484 ntTSL 1 (best) BASIC11.71□□□□□ -0.548e-6■■□□□ 12.8
UPF1Q92900 ACOT9-204ENST00000379303 3117 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.638e-6■■□□□ 12.8
UPF1Q92900 APOL2-201ENST00000249066 2685 ntAPPRIS P2 TSL 1 (best) BASIC10.28□□□□□ -0.764e-8■■□□□ 12.8
UPF1Q92900 PPM1K-210ENST00000608933 6484 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.828e-6■■□□□ 12.8
UPF1Q92900 PGAP2-232ENST00000528526 1106 ntTSL 29.76□□□□□ -0.858e-6■■□□□ 12.8
UPF1Q92900 APOL2-202ENST00000358502 2551 ntAPPRIS P2 TSL 1 (best) BASIC9.52□□□□□ -0.894e-8■■□□□ 12.8
UPF1Q92900 AC010487.3-201ENST00000634278 1966 ntAPPRIS P1 TSL 2 BASIC9.38□□□□□ -0.918e-6■■□□□ 12.8
UPF1Q92900 PGAP2-210ENST00000464441 699 ntTSL 5 BASIC8.76□□□□□ -1.018e-6■■□□□ 12.8
UPF1Q92900 MRPS27-201ENST00000261413 2785 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.028e-6■■□□□ 12.8
UPF1Q92900 ABCD3-203ENST00000464165 3174 ntTSL 28.58□□□□□ -1.048e-6■■□□□ 12.8
UPF1Q92900 MRPS27-202ENST00000457646 2628 ntTSL 2 BASIC7.62□□□□□ -1.198e-6■■□□□ 12.8
UPF1Q92900 ABCD3-202ENST00000370214 3538 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.248e-6■■□□□ 12.8
UPF1Q92900 MRPS27-206ENST00000515226 4435 ntTSL 26.79□□□□□ -1.328e-6■■□□□ 12.8
UPF1Q92900 ABCD3-205ENST00000484213 4367 ntTSL 1 (best)6.1□□□□□ -1.438e-6■■□□□ 12.8
UPF1Q92900 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC22.63■■□□□ 1.211e-10■■□□□ 12.8
UPF1Q92900 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.65■■□□□ 1.061e-10■■□□□ 12.8
UPF1Q92900 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.451e-10■■□□□ 12.8
UPF1Q92900 VEGFA-215ENST00000497139 2746 ntTSL 1 (best)12.39□□□□□ -0.431e-10■■□□□ 12.8
UPF1Q92900 VEGFA-212ENST00000480614 12167 ntTSL 1 (best)9.4□□□□□ -0.91e-10■■□□□ 12.8
UPF1Q92900 AGFG2-204ENST00000474713 1864 ntTSL 520.45■□□□□ 0.861e-7■■□□□ 12.8
UPF1Q92900 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.661e-7■■□□□ 12.8
UPF1Q92900 ULK1-207ENST00000544718 1678 ntTSL 229.95■■■□□ 2.391e-7■■□□□ 12.8
UPF1Q92900 CLUH-209ENST00000574210 1243 ntTSL 1 (best)25.42■■□□□ 1.664e-6■■□□□ 12.8
UPF1Q92900 RGP1-202ENST00000496906 1586 ntTSL 523.43■■□□□ 1.341e-7■■□□□ 12.8
UPF1Q92900 PHF1-204ENST00000427826 862 ntTSL 321.7■■□□□ 1.061e-7■■□□□ 12.8
UPF1Q92900 PEX19-208ENST00000532508 1237 ntTSL 519.17■□□□□ 0.661e-7■■□□□ 12.8
UPF1Q92900 PCNP-202ENST00000460231 2165 ntTSL 1 (best)17.49■□□□□ 0.391e-7■■□□□ 12.8
UPF1Q92900 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.321e-7■■□□□ 12.8
UPF1Q92900 PCNP-204ENST00000469941 2028 ntTSL 1 (best) BASIC15.66■□□□□ 0.11e-7■■□□□ 12.8
UPF1Q92900 CLUH-210ENST00000574426 3844 ntAPPRIS ALT2 TSL 515.54■□□□□ 0.084e-6■■□□□ 12.8
UPF1Q92900 ALDH9A1-201ENST00000354775 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.031e-7■■□□□ 12.8
UPF1Q92900 COA1-205ENST00000415798 524 ntAPPRIS ALT2 TSL 413.93□□□□□ -0.181e-7■■□□□ 12.8
UPF1Q92900 PCNP-206ENST00000486406 742 ntTSL 213.71□□□□□ -0.211e-7■■□□□ 12.8
UPF1Q92900 IER3IP1-201ENST00000256433 3689 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.571e-7■■□□□ 12.8
UPF1Q92900 AC012254.2-203ENST00000588705 561 ntAPPRIS P5 TSL 2 BASIC10.12□□□□□ -0.791e-7■■□□□ 12.8
UPF1Q92900 ABHD18-201ENST00000388795 5450 ntTSL 5 BASIC9.7□□□□□ -0.861e-13■■□□□ 12.8
UPF1Q92900 AC012254.2-202ENST00000602926 291 ntAPPRIS ALT2 TSL 28.43□□□□□ -1.061e-7■■□□□ 12.8
UPF1Q92900 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC8.26□□□□□ -1.091e-7■■□□□ 12.8
UPF1Q92900 ZSCAN12-201ENST00000361028 5495 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.121e-7■■□□□ 12.8
UPF1Q92900 ZSCAN12-202ENST00000396827 3909 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.231e-7■■□□□ 12.8
UPF1Q92900 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.514e-9■■□□□ 12.8
UPF1Q92900 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.131e-7■■□□□ 12.8
Retrieved 100 of 15,879 protein–RNA pairs in 92.8 ms