RNA–Protein interactions for RNA: ENST00000496906.1

RGP1-202, Transcript of RGP1 homolog, RAB6A GEF complex partner 1, humanhuman

TSL 5

Gene RGP1, Length 1,586 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RGP1-202ENST00000496906 NISCHQ9Y2I1 1504 aa43.05■■■■■ 4.48
RGP1-202ENST00000496906 CCDC180Q9P1Z9 1646 aa37.91■■■■□ 3.66
RGP1-202ENST00000496906 ABCC9O60706 1549 aa36.39■■■■□ 3.42
RGP1-202ENST00000496906 ZCCHC6Q5VYS8 1495 aaKnown RBP36.04■■■■□ 3.36
RGP1-202ENST00000496906 DCAF1Q9Y4B6 1507 aa35.65■■■■□ 3.3
RGP1-202ENST00000496906 DCAF8L2P0C7V8 631 aa35.62■■■■□ 3.29
RGP1-202ENST00000496906 MYO15BQ96JP2 1530 aa35.52■■■■□ 3.28
RGP1-202ENST00000496906 NACADO15069 1562 aa35.47■■■■□ 3.27
RGP1-202ENST00000496906 RB1CC1Q8TDY2 1594 aa35.31■■■■□ 3.24
RGP1-202ENST00000496906 SCRIBQ14160 1630 aa34.68■■■■□ 3.14
RGP1-202ENST00000496906 UNC13AQ9UPW8 1703 aa34.52■■■■□ 3.12
RGP1-202ENST00000496906 SHROOM4Q9ULL8 1493 aa34.48■■■■□ 3.11
RGP1-202ENST00000496906 BICRAQ9NZM4 1560 aa34.25■■■■□ 3.07
RGP1-202ENST00000496906 PABPN1Q86U42 306 aaKnown RBP eCLIP34.14■■■■□ 3.06
RGP1-202ENST00000496906 CECR2Q9BXF3 1484 aa33.47■■■□□ 2.95
RGP1-202ENST00000496906 BAZ1AQ9NRL2 1556 aaPredicted RBP33.3■■■□□ 2.92
RGP1-202ENST00000496906 EIF4G1Q04637 1599 aaKnown RBP33.28■■■□□ 2.92
RGP1-202ENST00000496906 SMARCA4P51532 1647 aa33.24■■■□□ 2.91
RGP1-202ENST00000496906 MROH2BQ7Z745 1585 aa33.2■■■□□ 2.91
RGP1-202ENST00000496906 RSF1Q96T23 1441 aaPredicted RBP33.09■■■□□ 2.89
RGP1-202ENST00000496906 DNAJC5BQ9UF47 199 aa33■■■□□ 2.87
RGP1-202ENST00000496906 CC2D2AQ9P2K1 1620 aa32.95■■■□□ 2.86
RGP1-202ENST00000496906 PEG3Q9GZU2 1588 aa32.91■■■□□ 2.86
RGP1-202ENST00000496906 ATAD2BQ9ULI0 1458 aa32.87■■■□□ 2.85
RGP1-202ENST00000496906 WIZO95785 1651 aa32.86■■■□□ 2.85
RGP1-202ENST00000496906 SMARCA2P51531 1590 aa32.85■■■□□ 2.85
RGP1-202ENST00000496906 SUPT5HO00267 1087 aaKnown RBP32.81■■■□□ 2.84
RGP1-202ENST00000496906 NCAPD3P42695 1498 aa32.73■■■□□ 2.83
RGP1-202ENST00000496906 HMGXB3Q12766 1538 aa32.64■■■□□ 2.82
RGP1-202ENST00000496906 BAZ1BQ9UIG0 1483 aaKnown RBP32.64■■■□□ 2.82
RGP1-202ENST00000496906 TOP2AP11388 1531 aaKnown RBP32.57■■■□□ 2.8
RGP1-202ENST00000496906 CCDC88BA6NC98 1476 aa32.19■■■□□ 2.74
RGP1-202ENST00000496906 CADPSQ9ULU8 1353 aa31.82■■■□□ 2.68
RGP1-202ENST00000496906 CFTRP13569 1480 aa31.8■■■□□ 2.68
RGP1-202ENST00000496906 LAMC3Q9Y6N6 1575 aa31.73■■■□□ 2.67
RGP1-202ENST00000496906 NESP48681 1621 aa31.73■■■□□ 2.67
RGP1-202ENST00000496906 PRDM2Q13029 1718 aa31.57■■■□□ 2.65
RGP1-202ENST00000496906 PDS5BQ9NTI5 1447 aa31.49■■■□□ 2.63
RGP1-202ENST00000496906 FANCD2Q9BXW9 1451 aa31.45■■■□□ 2.63
RGP1-202ENST00000496906 KIF21AQ7Z4S6 1674 aa31.35■■■□□ 2.61
RGP1-202ENST00000496906 CEP164Q9UPV0 1460 aa31.34■■■□□ 2.61
RGP1-202ENST00000496906 ERCC6Q03468 1493 aa31.29■■■□□ 2.6
RGP1-202ENST00000496906 ABCC8Q09428 1581 aa31.25■■■□□ 2.59
RGP1-202ENST00000496906 WRNQ14191 1432 aaPredicted RBP eCLIP31.18■■■□□ 2.58
RGP1-202ENST00000496906 MRC2Q9UBG0 1479 aa31.14■■■□□ 2.58
RGP1-202ENST00000496906 URB2Q14146 1524 aaKnown RBP31.11■■■□□ 2.57
RGP1-202ENST00000496906 CUX1P39880 1505 aa31.1■■■□□ 2.57
RGP1-202ENST00000496906 THOC2Q8NI27 1593 aaKnown RBP31.08■■■□□ 2.57
RGP1-202ENST00000496906 CHIC1Q5VXU3 224 aa31.08■■■□□ 2.57
RGP1-202ENST00000496906 SYNJ1O43426 1573 aa31.07■■■□□ 2.56
RGP1-202ENST00000496906 DNMBPQ6XZF7 1577 aa31.06■■■□□ 2.56
RGP1-202ENST00000496906 TOPBP1Q92547 1522 aa31.05■■■□□ 2.56
RGP1-202ENST00000496906 TOP2BQ02880 1626 aa31.02■■■□□ 2.56
RGP1-202ENST00000496906 WDR62O43379 1518 aa31.02■■■□□ 2.56
RGP1-202ENST00000496906 BIVM-ERCC5R4GMW8 1640 aa31■■■□□ 2.55
RGP1-202ENST00000496906 TRIM41Q8WV44 630 aa30.94■■■□□ 2.54
RGP1-202ENST00000496906 FGD5Q6ZNL6 1462 aa30.87■■■□□ 2.53
RGP1-202ENST00000496906 POLA1P09884 1462 aaPredicted RBP30.84■■■□□ 2.53
RGP1-202ENST00000496906 CUX2O14529 1486 aa30.8■■■□□ 2.52
RGP1-202ENST00000496906 SOGA1O94964 1423 aa30.7■■■□□ 2.51
RGP1-202ENST00000496906 RAD54L2Q9Y4B4 1467 aa30.7■■■□□ 2.5
RGP1-202ENST00000496906 IFT140Q96RY7 1462 aa30.66■■■□□ 2.5
RGP1-202ENST00000496906 TARBP1Q13395 1621 aaKnown RBP30.64■■■□□ 2.5
RGP1-202ENST00000496906 ABCA10Q8WWZ4 1543 aa30.61■■■□□ 2.49
RGP1-202ENST00000496906 WDR97A6NE52 1622 aa30.57■■■□□ 2.48
RGP1-202ENST00000496906 ZNF608Q9ULD9 1512 aaPredicted RBP30.47■■■□□ 2.47
RGP1-202ENST00000496906 KIF27Q86VH2 1401 aa30.46■■■□□ 2.47
RGP1-202ENST00000496906 TDRD9Q8NDG6 1382 aaKnown RBP30.45■■■□□ 2.47
RGP1-202ENST00000496906 RUSC2Q8N2Y8 1516 aa30.44■■■□□ 2.46
RGP1-202ENST00000496906 ABCA5Q8WWZ7 1642 aa30.42■■■□□ 2.46
RGP1-202ENST00000496906 AQRO60306 1485 aaKnown RBP eCLIP30.38■■■□□ 2.456e-6■■■■□ 23.2
RGP1-202ENST00000496906 EIF4G3O43432 1585 aaKnown RBP30.37■■■□□ 2.45
RGP1-202ENST00000496906 EEA1Q15075 1411 aa30.37■■■□□ 2.45
RGP1-202ENST00000496906 GAPVD1Q14C86 1478 aa30.37■■■□□ 2.45
RGP1-202ENST00000496906 FAM9AQ8IZU1 332 aaPredicted RBP30.29■■■□□ 2.44
RGP1-202ENST00000496906 GRIN2BQ13224 1484 aa30.26■■■□□ 2.43
RGP1-202ENST00000496906 IGF1RP08069 1367 aa30.25■■■□□ 2.43
RGP1-202ENST00000496906 ERICH3Q5RHP9 1530 aa30.25■■■□□ 2.43
RGP1-202ENST00000496906 PBRM1Q86U86 1689 aa30.24■■■□□ 2.43
RGP1-202ENST00000496906 CSRNP3Q8WYN3 585 aa30.22■■■□□ 2.43
RGP1-202ENST00000496906 SNAPC4Q5SXM2 1469 aa30.13■■■□□ 2.41
RGP1-202ENST00000496906 CUL7Q14999 1698 aa30.11■■■□□ 2.41
RGP1-202ENST00000496906 MAGI1Q96QZ7 1491 aaPredicted RBP30.1■■■□□ 2.41
RGP1-202ENST00000496906 PRXQ9BXM0 1461 aa30.09■■■□□ 2.41
RGP1-202ENST00000496906 ADAMTS12P58397 1594 aa30.08■■■□□ 2.41
RGP1-202ENST00000496906 CARMIL1Q5VZK9 1371 aa30.08■■■□□ 2.41
RGP1-202ENST00000496906 FHAD1B1AJZ9 1412 aa30.05■■■□□ 2.4
RGP1-202ENST00000496906 KIF21BO75037 1637 aa30.01■■■□□ 2.39
RGP1-202ENST00000496906 RAPGEF2Q9Y4G8 1499 aa29.98■■■□□ 2.39
RGP1-202ENST00000496906 SYNJ2O15056 1496 aa29.98■■■□□ 2.39
RGP1-202ENST00000496906 GOLGA3Q08378 1498 aa29.9■■■□□ 2.38
RGP1-202ENST00000496906 CHMP7Q8WUX9 453 aaPredicted RBP29.89■■■□□ 2.38
RGP1-202ENST00000496906 GRIN2AQ12879 1464 aa29.88■■■□□ 2.37
RGP1-202ENST00000496906 FBLN2P98095 1184 aa29.85■■■□□ 2.37
RGP1-202ENST00000496906 EHMT2Q96KQ7 1210 aa29.84■■■□□ 2.37
RGP1-202ENST00000496906 CHD1O14646 1710 aa29.82■■■□□ 2.36
RGP1-202ENST00000496906 LOC105371045A0A1W2PR82 267 aa29.8■■■□□ 2.36
RGP1-202ENST00000496906 UBTFP17480 764 aaKnown RBP29.73■■■□□ 2.35
RGP1-202ENST00000496906 NUP160Q12769 1436 aa29.73■■■□□ 2.35
RGP1-202ENST00000496906 CEP170Q5SW79 1584 aa29.71■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms