RNA–Protein interactions for RNA: ENST00000475657.1

FAM3A-218, Transcript of family with sequence similarity 3 member A, humanhuman

TSL 2

Gene FAM3A, Length 585 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM3A-218ENST00000475657 NISCHQ9Y2I1 1504 aa35.83■■■■□ 3.33
FAM3A-218ENST00000475657 ABCC9O60706 1549 aa33.02■■■□□ 2.88
FAM3A-218ENST00000475657 CCDC180Q9P1Z9 1646 aa32.4■■■□□ 2.78
FAM3A-218ENST00000475657 DNAJC5BQ9UF47 199 aa31.64■■■□□ 2.66
FAM3A-218ENST00000475657 RB1CC1Q8TDY2 1594 aa31.18■■■□□ 2.58
FAM3A-218ENST00000475657 NACADO15069 1562 aa30.85■■■□□ 2.53
FAM3A-218ENST00000475657 PABPN1Q86U42 306 aaKnown RBP eCLIP30.66■■■□□ 2.5
FAM3A-218ENST00000475657 DCAF8L2P0C7V8 631 aa30.47■■■□□ 2.47
FAM3A-218ENST00000475657 UNC13AQ9UPW8 1703 aa30.34■■■□□ 2.45
FAM3A-218ENST00000475657 MYO15BQ96JP2 1530 aa30.29■■■□□ 2.44
FAM3A-218ENST00000475657 BICRAQ9NZM4 1560 aa30.28■■■□□ 2.44
FAM3A-218ENST00000475657 SHROOM4Q9ULL8 1493 aa29.93■■■□□ 2.38
FAM3A-218ENST00000475657 CECR2Q9BXF3 1484 aa29.87■■■□□ 2.37
FAM3A-218ENST00000475657 CC2D2AQ9P2K1 1620 aa29.8■■■□□ 2.36
FAM3A-218ENST00000475657 DCAF1Q9Y4B6 1507 aa29.62■■■□□ 2.33
FAM3A-218ENST00000475657 DNAJC5Q9H3Z4 198 aa29.62■■■□□ 2.33
FAM3A-218ENST00000475657 EIF4G1Q04637 1599 aaKnown RBP29.6■■■□□ 2.33
FAM3A-218ENST00000475657 ZCCHC6Q5VYS8 1495 aaKnown RBP29.54■■■□□ 2.32
FAM3A-218ENST00000475657 SCRIBQ14160 1630 aa29.4■■■□□ 2.3
FAM3A-218ENST00000475657 CUX2O14529 1486 aa28.82■■■□□ 2.2
FAM3A-218ENST00000475657 ERCC6Q03468 1493 aa28.58■■■□□ 2.17
FAM3A-218ENST00000475657 NCAPD3P42695 1498 aa28.53■■■□□ 2.16
FAM3A-218ENST00000475657 ATAD2BQ9ULI0 1458 aa28.3■■■□□ 2.12
FAM3A-218ENST00000475657 HMGXB3Q12766 1538 aa28.2■■■□□ 2.1
FAM3A-218ENST00000475657 SMARCA2P51531 1590 aa28.18■■■□□ 2.1
FAM3A-218ENST00000475657 NESP48681 1621 aa28.17■■■□□ 2.1
FAM3A-218ENST00000475657 SMARCA4P51532 1647 aa28.03■■■□□ 2.08
FAM3A-218ENST00000475657 THOC2Q8NI27 1593 aaKnown RBP28.02■■■□□ 2.08
FAM3A-218ENST00000475657 BAZ1BQ9UIG0 1483 aaKnown RBP27.95■■■□□ 2.07
FAM3A-218ENST00000475657 LAMC3Q9Y6N6 1575 aa27.93■■■□□ 2.06
FAM3A-218ENST00000475657 TRIM41Q8WV44 630 aa27.9■■■□□ 2.06
FAM3A-218ENST00000475657 PEG3Q9GZU2 1588 aa27.85■■■□□ 2.05
FAM3A-218ENST00000475657 BAZ1AQ9NRL2 1556 aaPredicted RBP27.85■■■□□ 2.05
FAM3A-218ENST00000475657 PDS5BQ9NTI5 1447 aa27.84■■■□□ 2.05
FAM3A-218ENST00000475657 KIF21AQ7Z4S6 1674 aa27.72■■■□□ 2.03
FAM3A-218ENST00000475657 CADPSQ9ULU8 1353 aa27.61■■■□□ 2.01
FAM3A-218ENST00000475657 MRC2Q9UBG0 1479 aa27.58■■■□□ 2.01
FAM3A-218ENST00000475657 MROH2BQ7Z745 1585 aa27.56■■■□□ 2
FAM3A-218ENST00000475657 WDR62O43379 1518 aa27.54■■■□□ 2
FAM3A-218ENST00000475657 OSCARQ8IYS5 282 aa27.43■■□□□ 1.98
FAM3A-218ENST00000475657 CEP164Q9UPV0 1460 aa27.33■■□□□ 1.97
FAM3A-218ENST00000475657 FANCD2Q9BXW9 1451 aa27.25■■□□□ 1.95
FAM3A-218ENST00000475657 CFTRP13569 1480 aa27.15■■□□□ 1.94
FAM3A-218ENST00000475657 WIZO95785 1651 aa27.13■■□□□ 1.93
FAM3A-218ENST00000475657 URB2Q14146 1524 aaKnown RBP27.06■■□□□ 1.92
FAM3A-218ENST00000475657 RIMBP3CA6NJZ7 1639 aa27.01■■□□□ 1.92
FAM3A-218ENST00000475657 RIMBP3BA6NNM3 1639 aa27.01■■□□□ 1.92
FAM3A-218ENST00000475657 RIMBP3Q9UFD9 1639 aa27.01■■□□□ 1.92
FAM3A-218ENST00000475657 ARHGEF11O15085 1522 aa26.9■■□□□ 1.9
FAM3A-218ENST00000475657 IFT140Q96RY7 1462 aa26.85■■□□□ 1.89
FAM3A-218ENST00000475657 ZNF608Q9ULD9 1512 aaPredicted RBP26.82■■□□□ 1.88
FAM3A-218ENST00000475657 TOP2AP11388 1531 aaKnown RBP26.81■■□□□ 1.88
FAM3A-218ENST00000475657 RSF1Q96T23 1441 aaPredicted RBP26.8■■□□□ 1.88
FAM3A-218ENST00000475657 CYB5RLQ6IPT4 315 aa26.78■■□□□ 1.88
FAM3A-218ENST00000475657 TRHP20396 242 aaPredicted RBP26.67■■□□□ 1.86
FAM3A-218ENST00000475657 PRDM2Q13029 1718 aa26.66■■□□□ 1.86
FAM3A-218ENST00000475657 TOPBP1Q92547 1522 aa26.65■■□□□ 1.86
FAM3A-218ENST00000475657 ABCC8Q09428 1581 aa26.63■■□□□ 1.85
FAM3A-218ENST00000475657 ARAP1Q96P48 1450 aa26.6■■□□□ 1.85
FAM3A-218ENST00000475657 EIF4G3O43432 1585 aaKnown RBP26.59■■□□□ 1.85
FAM3A-218ENST00000475657 CCDC88BA6NC98 1476 aa26.54■■□□□ 1.84
FAM3A-218ENST00000475657 AQRO60306 1485 aaKnown RBP eCLIP26.5■■□□□ 1.83
FAM3A-218ENST00000475657 DNMBPQ6XZF7 1577 aa26.48■■□□□ 1.83
FAM3A-218ENST00000475657 CHD1O14646 1710 aa26.47■■□□□ 1.83
FAM3A-218ENST00000475657 FBLN2P98095 1184 aa26.45■■□□□ 1.82
FAM3A-218ENST00000475657 TARBP1Q13395 1621 aaKnown RBP26.45■■□□□ 1.82
FAM3A-218ENST00000475657 AEBP2Q6ZN18 517 aaPredicted RBP26.4■■□□□ 1.82
FAM3A-218ENST00000475657 POLA1P09884 1462 aaPredicted RBP26.34■■□□□ 1.81
FAM3A-218ENST00000475657 CLASP1Q7Z460 1538 aa26.26■■□□□ 1.79
FAM3A-218ENST00000475657 TDRD9Q8NDG6 1382 aaKnown RBP26.25■■□□□ 1.79
FAM3A-218ENST00000475657 SOGA1O94964 1423 aa26.23■■□□□ 1.79
FAM3A-218ENST00000475657 RAD54L2Q9Y4B4 1467 aa26.23■■□□□ 1.79
FAM3A-218ENST00000475657 CHMP7Q8WUX9 453 aaPredicted RBP26.2■■□□□ 1.78
FAM3A-218ENST00000475657 SNAPC4Q5SXM2 1469 aa26.19■■□□□ 1.78
FAM3A-218ENST00000475657 WDR97A6NE52 1622 aa26.19■■□□□ 1.78
FAM3A-218ENST00000475657 SYNJ1O43426 1573 aa26.18■■□□□ 1.78
FAM3A-218ENST00000475657 MAGI1Q96QZ7 1491 aaPredicted RBP26.17■■□□□ 1.78
FAM3A-218ENST00000475657 GRIN2BQ13224 1484 aa26.09■■□□□ 1.77
FAM3A-218ENST00000475657 SYNJ2O15056 1496 aa26.08■■□□□ 1.77
FAM3A-218ENST00000475657 FGD5Q6ZNL6 1462 aa26.06■■□□□ 1.76
FAM3A-218ENST00000475657 GAPVD1Q14C86 1478 aa26.04■■□□□ 1.76
FAM3A-218ENST00000475657 CUX1P39880 1505 aa25.93■■□□□ 1.74
FAM3A-218ENST00000475657 PBRM1Q86U86 1689 aa25.8■■□□□ 1.72
FAM3A-218ENST00000475657 ABCA10Q8WWZ4 1543 aa25.78■■□□□ 1.72
FAM3A-218ENST00000475657 ERCC6L2Q5T890 1561 aa25.74■■□□□ 1.71
FAM3A-218ENST00000475657 ABCA5Q8WWZ7 1642 aa25.74■■□□□ 1.71
FAM3A-218ENST00000475657 GRIN2AQ12879 1464 aa25.73■■□□□ 1.71
FAM3A-218ENST00000475657 NUP160Q12769 1436 aa25.71■■□□□ 1.71
FAM3A-218ENST00000475657 CEP170Q5SW79 1584 aa25.69■■□□□ 1.7
FAM3A-218ENST00000475657 SHROOM2Q13796 1616 aa25.61■■□□□ 1.69
FAM3A-218ENST00000475657 ADAMTS12P58397 1594 aa25.58■■□□□ 1.69
FAM3A-218ENST00000475657 KIF13AQ9H1H9 1805 aa25.57■■□□□ 1.68
FAM3A-218ENST00000475657 FHAD1B1AJZ9 1412 aa25.56■■□□□ 1.68
FAM3A-218ENST00000475657 WRNQ14191 1432 aaPredicted RBP eCLIP25.55■■□□□ 1.68
FAM3A-218ENST00000475657 PRG4Q92954 1404 aaPredicted RBP25.48■■□□□ 1.67
FAM3A-218ENST00000475657 ABCC10Q5T3U5 1492 aa25.47■■□□□ 1.67
FAM3A-218ENST00000475657 FAM69CQ0P6D2 419 aa25.47■■□□□ 1.67
FAM3A-218ENST00000475657 JPH4Q96JJ6 628 aa25.46■■□□□ 1.67
FAM3A-218ENST00000475657 ERICH3Q5RHP9 1530 aa25.43■■□□□ 1.66
FAM3A-218ENST00000475657 NPM1P06748 294 aaKnown RBP eCLIP25.42■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms