Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 TRIR-202ENST00000588213 841 ntTSL 3 BASIC26.55■■□□□ 1.84
CDX2Q99626 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC26.54■■□□□ 1.84
CDX2Q99626 AC110285.6-201ENST00000617652 491 ntBASIC26.54■■□□□ 1.84
CDX2Q99626 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC26.54■■□□□ 1.84
CDX2Q99626 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC26.54■■□□□ 1.84
CDX2Q99626 BX664725.1-201ENST00000438252 379 ntBASIC26.53■■□□□ 1.84
CDX2Q99626 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC26.53■■□□□ 1.84
CDX2Q99626 AC131281.2-201ENST00000520478 145 ntBASIC26.53■■□□□ 1.84
CDX2Q99626 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC26.53■■□□□ 1.84
CDX2Q99626 RARRES2P6-201ENST00000567333 442 ntBASIC26.53■■□□□ 1.84
CDX2Q99626 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
CDX2Q99626 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC26.52■■□□□ 1.84
CDX2Q99626 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC26.52■■□□□ 1.84
CDX2Q99626 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC26.52■■□□□ 1.84
CDX2Q99626 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC26.52■■□□□ 1.84
CDX2Q99626 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
CDX2Q99626 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.84
CDX2Q99626 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
CDX2Q99626 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
CDX2Q99626 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
CDX2Q99626 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC26.51■■□□□ 1.83
CDX2Q99626 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC26.51■■□□□ 1.83
CDX2Q99626 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
CDX2Q99626 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC26.5■■□□□ 1.83
CDX2Q99626 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC26.5■■□□□ 1.83
CDX2Q99626 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC26.5■■□□□ 1.83
CDX2Q99626 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC26.5■■□□□ 1.83
CDX2Q99626 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC26.5■■□□□ 1.83
CDX2Q99626 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
CDX2Q99626 AL136116.3-201ENST00000402907 1138 ntBASIC26.49■■□□□ 1.83
CDX2Q99626 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC26.49■■□□□ 1.83
CDX2Q99626 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
CDX2Q99626 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC26.48■■□□□ 1.83
CDX2Q99626 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC26.48■■□□□ 1.83
CDX2Q99626 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC26.48■■□□□ 1.83
CDX2Q99626 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC26.48■■□□□ 1.83
CDX2Q99626 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC26.47■■□□□ 1.83
CDX2Q99626 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
CDX2Q99626 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC26.46■■□□□ 1.83
CDX2Q99626 GUK1-205ENST00000366722 850 ntTSL 3 BASIC26.46■■□□□ 1.83
CDX2Q99626 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC26.46■■□□□ 1.83
CDX2Q99626 RPP21-222ENST00000433076 577 ntTSL 2 BASIC26.46■■□□□ 1.83
CDX2Q99626 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC26.46■■□□□ 1.83
CDX2Q99626 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC26.46■■□□□ 1.83
CDX2Q99626 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC26.46■■□□□ 1.83
CDX2Q99626 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC26.45■■□□□ 1.82
CDX2Q99626 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC26.45■■□□□ 1.82
CDX2Q99626 AC104564.3-201ENST00000582367 638 ntBASIC26.45■■□□□ 1.82
CDX2Q99626 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC26.44■■□□□ 1.82
CDX2Q99626 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC26.44■■□□□ 1.82
CDX2Q99626 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
CDX2Q99626 SRR-208ENST00000576848 588 ntTSL 4 BASIC26.44■■□□□ 1.82
CDX2Q99626 TSPY9P-201ENST00000440215 945 ntBASIC26.43■■□□□ 1.82
CDX2Q99626 TSPY11P-201ENST00000442607 1045 ntBASIC26.43■■□□□ 1.82
CDX2Q99626 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC26.43■■□□□ 1.82
CDX2Q99626 AC087393.1-201ENST00000582896 145 ntBASIC26.43■■□□□ 1.82
CDX2Q99626 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
CDX2Q99626 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC26.43■■□□□ 1.82
CDX2Q99626 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
CDX2Q99626 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
CDX2Q99626 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC26.42■■□□□ 1.82
CDX2Q99626 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
CDX2Q99626 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC26.42■■□□□ 1.82
CDX2Q99626 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC26.42■■□□□ 1.82
CDX2Q99626 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
CDX2Q99626 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CDX2Q99626 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC26.41■■□□□ 1.82
CDX2Q99626 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC26.41■■□□□ 1.82
CDX2Q99626 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC26.4■■□□□ 1.82
CDX2Q99626 AC096631.2-201ENST00000436136 790 ntBASIC26.4■■□□□ 1.82
CDX2Q99626 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC26.4■■□□□ 1.82
CDX2Q99626 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC26.39■■□□□ 1.82
CDX2Q99626 ZNRF2P3-201ENST00000424200 374 ntBASIC26.39■■□□□ 1.82
CDX2Q99626 AC026271.2-201ENST00000428091 497 ntBASIC26.39■■□□□ 1.82
CDX2Q99626 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC26.38■■□□□ 1.81
CDX2Q99626 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC26.38■■□□□ 1.81
CDX2Q99626 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC26.38■■□□□ 1.81
CDX2Q99626 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
CDX2Q99626 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
CDX2Q99626 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
CDX2Q99626 EBPL-204ENST00000378272 766 ntTSL 3 BASIC26.37■■□□□ 1.81
CDX2Q99626 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC26.37■■□□□ 1.81
CDX2Q99626 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC26.37■■□□□ 1.81
CDX2Q99626 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC26.36■■□□□ 1.81
CDX2Q99626 AC133561.4-201ENST00000566112 224 ntBASIC26.36■■□□□ 1.81
CDX2Q99626 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CDX2Q99626 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
CDX2Q99626 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
CDX2Q99626 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CDX2Q99626 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CDX2Q99626 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC26.34■■□□□ 1.81
CDX2Q99626 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC26.34■■□□□ 1.81
CDX2Q99626 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC26.34■■□□□ 1.81
CDX2Q99626 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
CDX2Q99626 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CDX2Q99626 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CDX2Q99626 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC26.33■■□□□ 1.81
CDX2Q99626 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC26.33■■□□□ 1.81
CDX2Q99626 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
CDX2Q99626 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms