Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
PTCHD1Q96NR3 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
PTCHD1Q96NR3 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC23.12■■□□□ 1.29
PTCHD1Q96NR3 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC23.12■■□□□ 1.29
PTCHD1Q96NR3 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC23.12■■□□□ 1.29
PTCHD1Q96NR3 ABHD17AP5-201ENST00000580133 923 ntBASIC23.12■■□□□ 1.29
PTCHD1Q96NR3 AL121749.1-202ENST00000609313 2153 ntBASIC23.12■■□□□ 1.29
PTCHD1Q96NR3 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
PTCHD1Q96NR3 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC23.11■■□□□ 1.29
PTCHD1Q96NR3 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC23.11■■□□□ 1.29
PTCHD1Q96NR3 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC23.11■■□□□ 1.29
PTCHD1Q96NR3 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
PTCHD1Q96NR3 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
PTCHD1Q96NR3 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC23.11■■□□□ 1.29
PTCHD1Q96NR3 AC025884.2-201ENST00000553429 711 ntBASIC23.1■■□□□ 1.29
PTCHD1Q96NR3 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC23.1■■□□□ 1.29
PTCHD1Q96NR3 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
PTCHD1Q96NR3 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
PTCHD1Q96NR3 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
PTCHD1Q96NR3 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC23.09■■□□□ 1.29
PTCHD1Q96NR3 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PTCHD1Q96NR3 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
PTCHD1Q96NR3 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PTCHD1Q96NR3 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC23.08■■□□□ 1.29
PTCHD1Q96NR3 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
PTCHD1Q96NR3 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC23.07■■□□□ 1.28
PTCHD1Q96NR3 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
PTCHD1Q96NR3 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PTCHD1Q96NR3 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC23.07■■□□□ 1.28
PTCHD1Q96NR3 AC007029.1-201ENST00000604183 313 ntBASIC23.07■■□□□ 1.28
PTCHD1Q96NR3 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PTCHD1Q96NR3 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
PTCHD1Q96NR3 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
PTCHD1Q96NR3 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC23.06■■□□□ 1.28
PTCHD1Q96NR3 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PTCHD1Q96NR3 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
PTCHD1Q96NR3 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
PTCHD1Q96NR3 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC23.06■■□□□ 1.28
PTCHD1Q96NR3 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
PTCHD1Q96NR3 HYI-213ENST00000583037 1322 ntTSL 5 BASIC23.06■■□□□ 1.28
PTCHD1Q96NR3 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
PTCHD1Q96NR3 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC23.05■■□□□ 1.28
PTCHD1Q96NR3 PFN2-211ENST00000489155 636 ntTSL 4 BASIC23.05■■□□□ 1.28
PTCHD1Q96NR3 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
PTCHD1Q96NR3 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PTCHD1Q96NR3 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
PTCHD1Q96NR3 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC23.04■■□□□ 1.28
PTCHD1Q96NR3 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC23.04■■□□□ 1.28
PTCHD1Q96NR3 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
PTCHD1Q96NR3 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PTCHD1Q96NR3 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
PTCHD1Q96NR3 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PTCHD1Q96NR3 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PTCHD1Q96NR3 AP004609.3-201ENST00000610705 1884 ntBASIC23.03■■□□□ 1.28
PTCHD1Q96NR3 MIR3960-201ENST00000583311 91 ntBASIC23.03■■□□□ 1.28
PTCHD1Q96NR3 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC23.03■■□□□ 1.28
PTCHD1Q96NR3 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
PTCHD1Q96NR3 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
PTCHD1Q96NR3 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
PTCHD1Q96NR3 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC23.02■■□□□ 1.28
PTCHD1Q96NR3 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
PTCHD1Q96NR3 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
PTCHD1Q96NR3 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
PTCHD1Q96NR3 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
PTCHD1Q96NR3 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC23.02■■□□□ 1.28
PTCHD1Q96NR3 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC23.02■■□□□ 1.28
PTCHD1Q96NR3 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC23.02■■□□□ 1.28
PTCHD1Q96NR3 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC23.02■■□□□ 1.27
PTCHD1Q96NR3 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
PTCHD1Q96NR3 RP9P-202ENST00000450133 1212 ntBASIC23.01■■□□□ 1.27
PTCHD1Q96NR3 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC23.01■■□□□ 1.27
PTCHD1Q96NR3 AC142472.1-201ENST00000612013 1741 ntBASIC23.01■■□□□ 1.27
PTCHD1Q96NR3 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC23.01■■□□□ 1.27
PTCHD1Q96NR3 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
PTCHD1Q96NR3 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
PTCHD1Q96NR3 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC23■■□□□ 1.27
PTCHD1Q96NR3 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC23■■□□□ 1.27
PTCHD1Q96NR3 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
PTCHD1Q96NR3 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
PTCHD1Q96NR3 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
PTCHD1Q96NR3 U85056.1-201ENST00000616429 682 ntBASIC22.99■■□□□ 1.27
PTCHD1Q96NR3 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC22.99■■□□□ 1.27
PTCHD1Q96NR3 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
PTCHD1Q96NR3 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
PTCHD1Q96NR3 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC22.99■■□□□ 1.27
PTCHD1Q96NR3 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
PTCHD1Q96NR3 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
PTCHD1Q96NR3 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC22.98■■□□□ 1.27
PTCHD1Q96NR3 AC093536.1-201ENST00000569153 554 ntBASIC22.98■■□□□ 1.27
PTCHD1Q96NR3 NTF6A-201ENST00000591175 560 ntBASIC22.98■■□□□ 1.27
PTCHD1Q96NR3 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
PTCHD1Q96NR3 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
PTCHD1Q96NR3 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC22.98■■□□□ 1.27
PTCHD1Q96NR3 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
PTCHD1Q96NR3 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
PTCHD1Q96NR3 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC22.97■■□□□ 1.27
PTCHD1Q96NR3 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
PTCHD1Q96NR3 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC22.97■■□□□ 1.27
PTCHD1Q96NR3 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC22.97■■□□□ 1.27
PTCHD1Q96NR3 GFER-205ENST00000569451 517 ntTSL 5 BASIC22.97■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms