Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 EIF4A1-231ENST00000584054 716 ntTSL 28.95□□□□□ -0.982e-7■■■■■ 29.7
LSM11P83369 EIF4A1-215ENST00000580886 562 ntTSL 28.95□□□□□ -0.982e-7■■■■■ 29.7
LSM11P83369 EIF4A1-232ENST00000584712 782 ntTSL 28.73□□□□□ -1.012e-7■■■■■ 29.7
LSM11P83369 EIF4A1-233ENST00000584784 818 ntTSL 58.61□□□□□ -1.032e-7■■■■■ 29.7
LSM11P83369 EIF4A1-209ENST00000578495 916 ntTSL 58.3□□□□□ -1.082e-7■■■■■ 29.7
LSM11P83369 EIF4A1-212ENST00000579085 569 ntTSL 47.78□□□□□ -1.162e-7■■■■■ 29.7
LSM11P83369 EIF4A1-202ENST00000396527 1169 ntTSL 27.63□□□□□ -1.192e-7■■■■■ 29.7
LSM11P83369 EIF4A1-237ENST00000585024 577 ntTSL 47.51□□□□□ -1.212e-7■■■■■ 29.7
LSM11P83369 EIF4A1-211ENST00000578754 547 ntTSL 44.82□□□□□ -1.642e-7■■■■■ 29.7
LSM11P83369 CDK5RAP3-207ENST00000578134 831 ntTSL 315.29■□□□□ 0.043e-9■■■■■ 29.7
LSM11P83369 CDK5RAP3-213ENST00000579605 560 ntTSL 411.81□□□□□ -0.523e-9■■■■■ 29.7
LSM11P83369 CDK5RAP3-212ENST00000579175 867 ntTSL 311.12□□□□□ -0.633e-9■■■■■ 29.7
LSM11P83369 CDK5RAP3-222ENST00000581708 543 ntTSL 410.84□□□□□ -0.673e-9■■■■■ 29.7
LSM11P83369 CDK5RAP3-204ENST00000577664 568 ntTSL 49.99□□□□□ -0.813e-9■■■■■ 29.7
LSM11P83369 CDK5RAP3-214ENST00000579632 738 ntTSL 49.5□□□□□ -0.893e-9■■■■■ 29.7
LSM11P83369 CDK5RAP3-208ENST00000578525 564 ntTSL 48.73□□□□□ -1.013e-9■■■■■ 29.7
LSM11P83369 CDK5RAP3-227ENST00000583352 901 ntTSL 38.56□□□□□ -1.043e-9■■■■■ 29.7
LSM11P83369 CDK5RAP3-220ENST00000581160 490 ntTSL 38.25□□□□□ -1.093e-9■■■■■ 29.7
LSM11P83369 PHKG2-209ENST00000565924 908 ntTSL 318.23■□□□□ 0.512e-6■■■■■ 29.6
LSM11P83369 PHKG2-208ENST00000565897 1068 ntTSL 514.15□□□□□ -0.142e-6■■■■■ 29.6
LSM11P83369 PHKG2-205ENST00000563607 726 ntTSL 213.04□□□□□ -0.322e-6■■■■■ 29.6
LSM11P83369 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.31■□□□□ 0.683e-8■■■■■ 29.5
LSM11P83369 ARHGEF1-218ENST00000599589 2636 ntTSL 1 (best)18.25■□□□□ 0.513e-8■■■■■ 29.5
LSM11P83369 ARHGEF1-205ENST00000593609 576 ntTSL 216.91■□□□□ 0.33e-8■■■■■ 29.5
LSM11P83369 ARHGEF1-213ENST00000595897 2973 ntTSL 1 (best)16.46■□□□□ 0.233e-8■■■■■ 29.5
LSM11P83369 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC15.19■□□□□ 0.023e-8■■■■■ 29.5
LSM11P83369 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -03e-8■■■■■ 29.5
LSM11P83369 AP003716.1-203ENST00000533670 613 ntTSL 3 BASIC14.58□□□□□ -0.083e-8■■■■■ 29.5
LSM11P83369 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC13.78□□□□□ -0.23e-8■■■■■ 29.5
LSM11P83369 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC13.57□□□□□ -0.243e-8■■■■■ 29.5
LSM11P83369 ARHGEF1-203ENST00000354532 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.433e-8■■■■■ 29.5
LSM11P83369 ARHGEF1-220ENST00000600274 3439 ntTSL 1 (best)10.95□□□□□ -0.663e-8■■■■■ 29.5
LSM11P83369 RNU6-46P-201ENST00000383860 107 ntBASIC0.54□□□□□ -2.323e-8■■■■■ 29.5
LSM11P83369 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC14.51□□□□□ -0.091e-9■■■■■ 29.5
LSM11P83369 HIST4H4-201ENST00000358064 1918 ntTSL 1 (best)9.78□□□□□ -0.841e-9■■■■■ 29.5
LSM11P83369 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC18.08■□□□□ 0.484e-8■■■■■ 29.5
LSM11P83369 MARCH6-203ENST00000502795 580 ntTSL 412.39□□□□□ -0.432e-9■■■■■ 29.5
LSM11P83369 MARCH6-209ENST00000510872 577 ntTSL 410.65□□□□□ -0.72e-9■■■■■ 29.5
LSM11P83369 MARCH6-202ENST00000449913 3062 ntTSL 2 BASIC9.16□□□□□ -0.942e-9■■■■■ 29.5
LSM11P83369 MARCH6-207ENST00000507863 582 ntTSL 48.68□□□□□ -1.022e-9■■■■■ 29.5
LSM11P83369 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC8.51□□□□□ -1.052e-9■■■■■ 29.5
LSM11P83369 MARCH6-204ENST00000503788 2874 ntTSL 2 BASIC7.92□□□□□ -1.142e-9■■■■■ 29.5
LSM11P83369 MARCH6-210ENST00000511802 4734 ntTSL 26.76□□□□□ -1.332e-9■■■■■ 29.5
LSM11P83369 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.432e-9■■■■■ 29.5
LSM11P83369 TIPIN-203ENST00000562124 1009 ntAPPRIS ALT2 TSL 514.04□□□□□ -0.164e-46■■■■■ 29.4
LSM11P83369 TIPIN-204ENST00000566524 1459 ntTSL 211.25□□□□□ -0.614e-46■■■■■ 29.4
LSM11P83369 TIPIN-201ENST00000261881 1744 ntAPPRIS P2 TSL 1 (best) BASIC10.24□□□□□ -0.774e-46■■■■■ 29.4
LSM11P83369 SCARNA14-201ENST00000516903 136 ntBASIC3.46□□□□□ -1.864e-46■■■■■ 29.4
LSM11P83369 GET4-206ENST00000464468 676 ntTSL 315.28■□□□□ 0.046e-11■■■■■ 29.4
LSM11P83369 HIST1H4E-201ENST00000615164 1487 ntAPPRIS P1 BASIC9.21□□□□□ -0.935e-10■■■■■ 29.2
LSM11P83369 DTL-201ENST00000366991 4573 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.672e-9■■■■■ 29.2
LSM11P83369 DTL-206ENST00000542077 4471 ntTSL 2 BASIC8.49□□□□□ -1.052e-9■■■■■ 29.2
LSM11P83369 DTL-203ENST00000475419 3662 ntTSL 25.18□□□□□ -1.582e-9■■■■■ 29.2
LSM11P83369 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.133e-6■■■■■ 29.1
LSM11P83369 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.993e-6■■■■■ 29.1
LSM11P83369 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.43e-6■■■■■ 29.1
LSM11P83369 AKT1-215ENST00000555926 553 ntTSL 316.85■□□□□ 0.293e-6■■■■■ 29.1
LSM11P83369 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.063e-6■■■■■ 29.1
LSM11P83369 AKT1-208ENST00000554581 3916 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.553e-6■■■■■ 29.1
LSM11P83369 AKT1-202ENST00000402615 3913 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.713e-6■■■■■ 29.1
LSM11P83369 ZFYVE27-210ENST00000477521 743 ntTSL 210.96□□□□□ -0.651e-7■■■■■ 29.1
LSM11P83369 SDF4-206ENST00000478938 2591 ntTSL 219.94■□□□□ 0.781e-6■■■■■ 29.1
LSM11P83369 FAM229A-203ENST00000428500 362 ntAPPRIS ALT2 TSL 215.46■□□□□ 0.073e-7■■■■■ 29.1
LSM11P83369 ENTPD6-214ENST00000463734 639 ntTSL 211.71□□□□□ -0.533e-8■■■■■ 29
LSM11P83369 NUP85-215ENST00000580879 583 ntTSL 311.65□□□□□ -0.543e-8■■■■■ 29
LSM11P83369 NUP85-208ENST00000578830 922 ntTSL 510.58□□□□□ -0.723e-8■■■■■ 29
LSM11P83369 NUP85-206ENST00000577645 869 ntTSL 39.02□□□□□ -0.973e-8■■■■■ 29
LSM11P83369 NUP85-212ENST00000579557 817 ntTSL 58.44□□□□□ -1.063e-8■■■■■ 29
LSM11P83369 NUP85-218ENST00000582681 595 ntTSL 26.87□□□□□ -1.313e-8■■■■■ 29
LSM11P83369 PPP1R12C-203ENST00000586197 472 ntTSL 513.3□□□□□ -0.282e-7■■■■■ 29
LSM11P83369 CBX4-203ENST00000494546 432 ntTSL 328.78■■■□□ 2.21e-6■■■■■ 28.9
LSM11P83369 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC26.14■■□□□ 1.781e-6■■■■■ 28.9
LSM11P83369 ACER3-214ENST00000534206 834 ntTSL 524.63■■□□□ 1.531e-6■■■■■ 28.9
LSM11P83369 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC24.6■■□□□ 1.531e-6■■■■■ 28.9
LSM11P83369 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.171e-6■■■■■ 28.9
LSM11P83369 BPHL-206ENST00000430655 2157 ntTSL 1 (best)22.33■■□□□ 1.161e-6■■■■■ 28.9
LSM11P83369 LRRC8B-204ENST00000449440 763 ntTSL 321.7■■□□□ 1.061e-6■■■■■ 28.9
LSM11P83369 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC21.55■■□□□ 1.041e-6■■■■■ 28.9
LSM11P83369 ACER3-204ENST00000525861 2058 ntTSL 221.47■■□□□ 1.031e-6■■■■■ 28.9
LSM11P83369 BPHL-205ENST00000424847 1563 ntTSL 1 (best)21.28■■□□□ 11e-6■■■■■ 28.9
LSM11P83369 ACER3-211ENST00000531461 1292 ntTSL 220.92■□□□□ 0.941e-6■■■■■ 28.9
LSM11P83369 ACER3-207ENST00000530182 551 ntTSL 520.87■□□□□ 0.931e-6■■■■■ 28.9
LSM11P83369 DENND4A-208ENST00000568515 2655 ntTSL 220.38■□□□□ 0.851e-23■■■■■ 28.9
LSM11P83369 ACER3-202ENST00000525194 846 ntTSL 1 (best)19.98■□□□□ 0.791e-6■■■■■ 28.9
LSM11P83369 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.3■□□□□ 0.685e-18■■■■■ 28.9
LSM11P83369 KLHL24-203ENST00000437402 563 ntTSL 519.04■□□□□ 0.641e-6■■■■■ 28.9
LSM11P83369 MARK3-219ENST00000559328 533 ntTSL 418.32■□□□□ 0.525e-18■■■■■ 28.9
LSM11P83369 KLHL24-212ENST00000481126 389 ntTSL 218.3■□□□□ 0.521e-6■■■■■ 28.9
LSM11P83369 KLHL24-215ENST00000493074 627 ntTSL 418.3■□□□□ 0.521e-6■■■■■ 28.9
LSM11P83369 KLHL24-213ENST00000482138 588 ntTSL 418.3■□□□□ 0.521e-6■■■■■ 28.9
LSM11P83369 STRN4-222ENST00000601869 2240 nt18.23■□□□□ 0.511e-6■■■■■ 28.9
LSM11P83369 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.491e-6■■■■■ 28.9
LSM11P83369 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.99■□□□□ 0.471e-6■■■■■ 28.9
LSM11P83369 RPL18-211ENST00000550973 1111 ntTSL 517.81■□□□□ 0.441e-6■■■■■ 28.9
LSM11P83369 BPHL-207ENST00000433912 1063 ntTSL 217.78■□□□□ 0.441e-6■■■■■ 28.9
LSM11P83369 AL390719.1-204ENST00000412397 1219 ntBASIC17.69■□□□□ 0.421e-6■■■■■ 28.9
LSM11P83369 KLHL24-204ENST00000454495 603 ntTSL 317.67■□□□□ 0.421e-6■■■■■ 28.9
LSM11P83369 DENND4A-206ENST00000564674 3389 ntTSL 1 (best)17.63■□□□□ 0.411e-23■■■■■ 28.9
LSM11P83369 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC17.43■□□□□ 0.381e-6■■■■■ 28.9
LSM11P83369 KLHL24-206ENST00000461813 587 ntTSL 417.28■□□□□ 0.361e-6■■■■■ 28.9
Retrieved 100 of 11,495 protein–RNA pairs in 240.5 ms