RNA–Protein interactions for RNA: ENST00000564674.5

DENND4A-206, Transcript of DENN domain containing 4A, humanhuman

TSL 1 (best)

Gene DENND4A, Length 3,389 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DENND4A-206ENST00000564674 NISCHQ9Y2I1 1504 aa35.48■■■■□ 3.27
DENND4A-206ENST00000564674 SHROOM4Q9ULL8 1493 aa32.05■■■□□ 2.72
DENND4A-206ENST00000564674 SUPT5HO00267 1087 aaKnown RBP31.78■■■□□ 2.68
DENND4A-206ENST00000564674 DCAF8L2P0C7V8 631 aa30.92■■■□□ 2.54
DENND4A-206ENST00000564674 PCGF6Q9BYE7 350 aa30.8■■■□□ 2.52
DENND4A-206ENST00000564674 HRCP23327 699 aa30.71■■■□□ 2.51
DENND4A-206ENST00000564674 PPARGC1BQ86YN6 1023 aaKnown RBP30.63■■■□□ 2.49
DENND4A-206ENST00000564674 CHIC1Q5VXU3 224 aa30.6■■■□□ 2.49
DENND4A-206ENST00000564674 MYO15BQ96JP2 1530 aa30.55■■■□□ 2.48
DENND4A-206ENST00000564674 LOC105371045A0A1W2PR82 267 aa30.24■■■□□ 2.43
DENND4A-206ENST00000564674 ZCCHC6Q5VYS8 1495 aaKnown RBP29.99■■■□□ 2.39
DENND4A-206ENST00000564674 EHMT2Q96KQ7 1210 aa29.79■■■□□ 2.36
DENND4A-206ENST00000564674 FAM9AQ8IZU1 332 aaPredicted RBP29.56■■■□□ 2.32
DENND4A-206ENST00000564674 TRIM26Q12899 539 aaPredicted RBP29.52■■■□□ 2.32
DENND4A-206ENST00000564674 DCAF1Q9Y4B6 1507 aa29.35■■■□□ 2.29
DENND4A-206ENST00000564674 CCDC180Q9P1Z9 1646 aa29.22■■■□□ 2.27
DENND4A-206ENST00000564674 TRIM41Q8WV44 630 aa29.17■■■□□ 2.26
DENND4A-206ENST00000564674 SCAF1Q9H7N4 1312 aaKnown RBP28.93■■■□□ 2.22
DENND4A-206ENST00000564674 ZEB1P37275 1124 aaPredicted RBP28.91■■■□□ 2.22
DENND4A-206ENST00000564674 TTBK1Q5TCY1 1321 aaPredicted RBP28.87■■■□□ 2.21
DENND4A-206ENST00000564674 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.75■■■□□ 2.19
DENND4A-206ENST00000564674 CCER1Q8TC90 406 aaPredicted RBP28.6■■■□□ 2.17
DENND4A-206ENST00000564674 RSF1Q96T23 1441 aaPredicted RBP28.59■■■□□ 2.17
DENND4A-206ENST00000564674 ABCC9O60706 1549 aa28.56■■■□□ 2.16
DENND4A-206ENST00000564674 PELP1Q8IZL8 1130 aaKnown RBP28.51■■■□□ 2.16
DENND4A-206ENST00000564674 SCRIBQ14160 1630 aa28.49■■■□□ 2.15
DENND4A-206ENST00000564674 NEUROD1Q13562 356 aa28.41■■■□□ 2.14
DENND4A-206ENST00000564674 RB1CC1Q8TDY2 1594 aa28.38■■■□□ 2.13
DENND4A-206ENST00000564674 ACIN1Q9UKV3 1341 aaKnown RBP28.28■■■□□ 2.12
DENND4A-206ENST00000564674 GTF3C3Q9Y5Q9 886 aa28.26■■■□□ 2.11
DENND4A-206ENST00000564674 DIEXFQ68CQ4 756 aaKnown RBP28.24■■■□□ 2.11
DENND4A-206ENST00000564674 YTHDC1Q96MU7 727 aaKnown RBP28.18■■■□□ 2.1
DENND4A-206ENST00000564674 CECR2Q9BXF3 1484 aa28.12■■■□□ 2.09
DENND4A-206ENST00000564674 CENPBP07199 599 aaPredicted RBP28.03■■■□□ 2.08
DENND4A-206ENST00000564674 UBTFP17480 764 aaKnown RBP27.9■■■□□ 2.06
DENND4A-206ENST00000564674 MROH2BQ7Z745 1585 aa27.88■■■□□ 2.05
DENND4A-206ENST00000564674 RANGAP1P46060 587 aaPredicted RBP27.82■■■□□ 2.04
DENND4A-206ENST00000564674 HNRNPUL2Q1KMD3 747 aaKnown RBP27.82■■■□□ 2.04
DENND4A-206ENST00000564674 WIZO95785 1651 aa27.74■■■□□ 2.03
DENND4A-206ENST00000564674 ZNF316A6NFI3 1004 aaPredicted RBP27.68■■■□□ 2.02
DENND4A-206ENST00000564674 MIER1Q8N108 512 aa27.62■■■□□ 2.01
DENND4A-206ENST00000564674 ABCC8Q09428 1581 aa27.61■■■□□ 2.01
DENND4A-206ENST00000564674 CCDC88BA6NC98 1476 aa27.59■■■□□ 2.01
DENND4A-206ENST00000564674 CEP162Q5TB80 1403 aa27.58■■■□□ 2.01
DENND4A-206ENST00000564674 SOGA1O94964 1423 aa27.58■■■□□ 2
DENND4A-206ENST00000564674 PABPN1Q86U42 306 aaKnown RBP eCLIP27.53■■■□□ 2
DENND4A-206ENST00000564674 CSRNP3Q8WYN3 585 aa27.49■■□□□ 1.99
DENND4A-206ENST00000564674 RUSC2Q8N2Y8 1516 aa27.43■■□□□ 1.98
DENND4A-206ENST00000564674 APLP2Q06481 763 aa27.3■■□□□ 1.96
DENND4A-206ENST00000564674 TNIKQ9UKE5 1360 aa27.28■■□□□ 1.96
DENND4A-206ENST00000564674 WRNQ14191 1432 aaPredicted RBP eCLIP27.25■■□□□ 1.958e-8■■■■■ 53.5
DENND4A-206ENST00000564674 BAZ1AQ9NRL2 1556 aaPredicted RBP27.19■■□□□ 1.94
DENND4A-206ENST00000564674 NACADO15069 1562 aa27.18■■□□□ 1.94
DENND4A-206ENST00000564674 MYT1Q01538 1121 aa27.08■■□□□ 1.92
DENND4A-206ENST00000564674 EIF4G1Q04637 1599 aaKnown RBP27.05■■□□□ 1.92
DENND4A-206ENST00000564674 ITGAEP38570 1179 aa27.05■■□□□ 1.92
DENND4A-206ENST00000564674 GOLGA3Q08378 1498 aa27.01■■□□□ 1.91
DENND4A-206ENST00000564674 CLIP1P30622 1438 aa26.98■■□□□ 1.91
DENND4A-206ENST00000564674 TOP2AP11388 1531 aaKnown RBP26.96■■□□□ 1.91
DENND4A-206ENST00000564674 SMARCA2P51531 1590 aa26.95■■□□□ 1.91
DENND4A-206ENST00000564674 BCANQ96GW7 911 aa26.88■■□□□ 1.89
DENND4A-206ENST00000564674 EEA1Q15075 1411 aa26.84■■□□□ 1.89
DENND4A-206ENST00000564674 SUPT16HQ9Y5B9 1047 aaKnown RBP26.84■■□□□ 1.89
DENND4A-206ENST00000564674 SMARCA4P51532 1647 aa26.82■■□□□ 1.88
DENND4A-206ENST00000564674 KCNH8Q96L42 1107 aa26.8■■□□□ 1.88
DENND4A-206ENST00000564674 KANK4Q5T7N3 995 aaPredicted RBP26.77■■□□□ 1.88
DENND4A-206ENST00000564674 CEP164Q9UPV0 1460 aa26.73■■□□□ 1.87
DENND4A-206ENST00000564674 RAPGEF2Q9Y4G8 1499 aa26.73■■□□□ 1.87
DENND4A-206ENST00000564674 VPS8Q8N3P4 1428 aa26.72■■□□□ 1.87
DENND4A-206ENST00000564674 DHX57Q6P158 1386 aaKnown RBP26.63■■□□□ 1.85
DENND4A-206ENST00000564674 HIRIP3Q9BW71 556 aaPredicted RBP26.6■■□□□ 1.85
DENND4A-206ENST00000564674 SYNJ1O43426 1573 aa26.59■■□□□ 1.85
DENND4A-206ENST00000564674 TSHZ2Q9NRE2 1034 aa26.58■■□□□ 1.85
DENND4A-206ENST00000564674 DDX10Q13206 875 aaKnown RBP26.52■■□□□ 1.84
DENND4A-206ENST00000564674 ATP1B4Q9UN42 357 aaPredicted RBP26.52■■□□□ 1.84
DENND4A-206ENST00000564674 FKBP8Q14318 412 aa26.49■■□□□ 1.83
DENND4A-206ENST00000564674 KIF21BO75037 1637 aa26.48■■□□□ 1.83
DENND4A-206ENST00000564674 SIN3AQ96ST3 1273 aa26.42■■□□□ 1.82
DENND4A-206ENST00000564674 TRIM52Q96A61 297 aa26.4■■□□□ 1.82
DENND4A-206ENST00000564674 FAM50AQ14320 339 aaKnown RBP26.37■■□□□ 1.81
DENND4A-206ENST00000564674 P3H3Q8IVL6 736 aa26.34■■□□□ 1.81
DENND4A-206ENST00000564674 CLSPNQ9HAW4 1339 aa26.31■■□□□ 1.8
DENND4A-206ENST00000564674 ANP32EQ9BTT0 268 aa26.3■■□□□ 1.8
DENND4A-206ENST00000564674 BAZ1BQ9UIG0 1483 aaKnown RBP26.26■■□□□ 1.79
DENND4A-206ENST00000564674 UNC13AQ9UPW8 1703 aa26.26■■□□□ 1.79
DENND4A-206ENST00000564674 CCNB3Q8WWL7 1395 aa26.24■■□□□ 1.79
DENND4A-206ENST00000564674 ARAP1Q96P48 1450 aa26.24■■□□□ 1.79
DENND4A-206ENST00000564674 NEFLP07196 543 aa26.21■■□□□ 1.79
DENND4A-206ENST00000564674 RAB3GAP2Q9H2M9 1393 aa26.21■■□□□ 1.79
DENND4A-206ENST00000564674 ATAD2BQ9ULI0 1458 aa26.19■■□□□ 1.78
DENND4A-206ENST00000564674 IRX6P78412 446 aaPredicted RBP26.15■■□□□ 1.78
DENND4A-206ENST00000564674 BICRAQ9NZM4 1560 aa26.07■■□□□ 1.76
DENND4A-206ENST00000564674 RBM19Q9Y4C8 960 aaKnown RBP26.06■■□□□ 1.76
DENND4A-206ENST00000564674 RRBP1Q9P2E9 1410 aaKnown RBP26.04■■□□□ 1.76
DENND4A-206ENST00000564674 ANP32CO43423 234 aa26.04■■□□□ 1.76
DENND4A-206ENST00000564674 PRXQ9BXM0 1461 aa26.02■■□□□ 1.76
DENND4A-206ENST00000564674 BCL11AQ9H165 835 aa25.99■■□□□ 1.75
DENND4A-206ENST00000564674 KIF27Q86VH2 1401 aa25.97■■□□□ 1.75
DENND4A-206ENST00000564674 ARHGAP35Q9NRY4 1499 aa25.95■■□□□ 1.75
DENND4A-206ENST00000564674 WDR97A6NE52 1622 aa25.94■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms