RNA–Protein interactions for RNA: ENST00000601869.1

STRN4-222, Transcript of striatin 4, human

Gene STRN4, Length 2,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
STRN4-222	ENST00000601869	NISCH	Q9Y2I1	1504 aa		38.75	■■■■□ 3.79
STRN4-222	ENST00000601869	CCDC180	Q9P1Z9	1646 aa		33.35	■■■□□ 2.93
STRN4-222	ENST00000601869	HRC	P23327	699 aa		32.82	■■■□□ 2.84
STRN4-222	ENST00000601869	ZCCHC6	Q5VYS8	1495 aa	Known RBP	32.7	■■■□□ 2.83
STRN4-222	ENST00000601869	SHROOM4	Q9ULL8	1493 aa		32.62	■■■□□ 2.81
STRN4-222	ENST00000601869	SUPT5H	O00267	1087 aa	Known RBP	32.42	■■■□□ 2.78
STRN4-222	ENST00000601869	MYO15B	Q96JP2	1530 aa		32.27	■■■□□ 2.76
STRN4-222	ENST00000601869	CHIC1	Q5VXU3	224 aa		32.14	■■■□□ 2.74
STRN4-222	ENST00000601869	DCAF1	Q9Y4B6	1507 aa		32	■■■□□ 2.71
STRN4-222	ENST00000601869	DCAF8L2	P0C7V8	631 aa		31.99	■■■□□ 2.71
STRN4-222	ENST00000601869	PCGF6	Q9BYE7	350 aa		31.96	■■■□□ 2.71
STRN4-222	ENST00000601869	PPARGC1B	Q86YN6	1023 aa	Known RBP	31.66	■■■□□ 2.66
STRN4-222	ENST00000601869	PELP1	Q8IZL8	1130 aa	Known RBP	31.65	■■■□□ 2.66
STRN4-222	ENST00000601869	TRIM26	Q12899	539 aa	Predicted RBP	31.36	■■■□□ 2.61
STRN4-222	ENST00000601869	ZEB1	P37275	1124 aa	Predicted RBP	31.27	■■■□□ 2.6
STRN4-222	ENST00000601869	ABCC9	O60706	1549 aa		31.11	■■■□□ 2.57
STRN4-222	ENST00000601869	LOC105371045	A0A1W2PR82	267 aa		31.03	■■■□□ 2.56
STRN4-222	ENST00000601869	SCRIB	Q14160	1630 aa		30.96	■■■□□ 2.55
STRN4-222	ENST00000601869	NACAD	O15069	1562 aa		30.92	■■■□□ 2.54
STRN4-222	ENST00000601869	SCAF1	Q9H7N4	1312 aa	Known RBP	30.7	■■■□□ 2.5
STRN4-222	ENST00000601869	RB1CC1	Q8TDY2	1594 aa		30.51	■■■□□ 2.47
STRN4-222	ENST00000601869	MYT1	Q01538	1121 aa		30.51	■■■□□ 2.47
STRN4-222	ENST00000601869	RSF1	Q96T23	1441 aa	Predicted RBP	30.39	■■■□□ 2.46
STRN4-222	ENST00000601869	TRIM41	Q8WV44	630 aa		30.28	■■■□□ 2.44
STRN4-222	ENST00000601869	ACIN1	Q9UKV3	1341 aa	Known RBP	30.22	■■■□□ 2.43
STRN4-222	ENST00000601869	CECR2	Q9BXF3	1484 aa		30.16	■■■□□ 2.42
STRN4-222	ENST00000601869	MROH2B	Q7Z745	1585 aa		30.04	■■■□□ 2.4
STRN4-222	ENST00000601869	CENPB	P07199	599 aa	Predicted RBP	30	■■■□□ 2.39
STRN4-222	ENST00000601869	UNC13A	Q9UPW8	1703 aa		29.99	■■■□□ 2.39
STRN4-222	ENST00000601869	NEUROD1	Q13562	356 aa		29.94	■■■□□ 2.38
STRN4-222	ENST00000601869	FAM9A	Q8IZU1	332 aa	Predicted RBP	29.86	■■■□□ 2.37
STRN4-222	ENST00000601869	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	29.84	■■■□□ 2.37
STRN4-222	ENST00000601869	WIZ	O95785	1651 aa		29.84	■■■□□ 2.37
STRN4-222	ENST00000601869	CCER1	Q8TC90	406 aa	Predicted RBP	29.79	■■■□□ 2.36
STRN4-222	ENST00000601869	DIEXF	Q68CQ4	756 aa	Known RBP	29.77	■■■□□ 2.36
STRN4-222	ENST00000601869	GTF3C3	Q9Y5Q9	886 aa		29.77	■■■□□ 2.36
STRN4-222	ENST00000601869	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	29.68	■■■□□ 2.34
STRN4-222	ENST00000601869	WRN	Q14191	1432 aa	Predicted RBP eCLIP	29.65	■■■□□ 2.34
STRN4-222	ENST00000601869	SMARCA4	P51532	1647 aa		29.65	■■■□□ 2.34
STRN4-222	ENST00000601869	BICRA	Q9NZM4	1560 aa		29.65	■■■□□ 2.34
STRN4-222	ENST00000601869	EIF4G1	Q04637	1599 aa	Known RBP	29.56	■■■□□ 2.32
STRN4-222	ENST00000601869	PABPN1	Q86U42	306 aa	Known RBP eCLIP	29.55	■■■□□ 2.32	1e-8	■□□□□ 9.8
STRN4-222	ENST00000601869	TOP2A	P11388	1531 aa	Known RBP	29.46	■■■□□ 2.31
STRN4-222	ENST00000601869	EHMT2	Q96KQ7	1210 aa		29.4	■■■□□ 2.3
STRN4-222	ENST00000601869	ZNF316	A6NFI3	1004 aa	Predicted RBP	29.36	■■■□□ 2.29
STRN4-222	ENST00000601869	CEP162	Q5TB80	1403 aa		29.27	■■■□□ 2.28
STRN4-222	ENST00000601869	SMARCA2	P51531	1590 aa		29.25	■■■□□ 2.27
STRN4-222	ENST00000601869	CCDC88B	A6NC98	1476 aa		29.24	■■■□□ 2.27
STRN4-222	ENST00000601869	TNIK	Q9UKE5	1360 aa		29.22	■■■□□ 2.27
STRN4-222	ENST00000601869	EEA1	Q15075	1411 aa		29.18	■■■□□ 2.26
STRN4-222	ENST00000601869	PEG3	Q9GZU2	1588 aa		29.18	■■■□□ 2.26
STRN4-222	ENST00000601869	CLSPN	Q9HAW4	1339 aa		29.08	■■■□□ 2.25
STRN4-222	ENST00000601869	ATAD2B	Q9ULI0	1458 aa		28.99	■■■□□ 2.23
STRN4-222	ENST00000601869	ABCC8	Q09428	1581 aa		28.97	■■■□□ 2.23
STRN4-222	ENST00000601869	YTHDC1	Q96MU7	727 aa	Known RBP	28.92	■■■□□ 2.22
STRN4-222	ENST00000601869	GOLGA3	Q08378	1498 aa		28.92	■■■□□ 2.22
STRN4-222	ENST00000601869	MIER1	Q8N108	512 aa		28.92	■■■□□ 2.22
STRN4-222	ENST00000601869	BAZ1B	Q9UIG0	1483 aa	Known RBP	28.88	■■■□□ 2.21
STRN4-222	ENST00000601869	SOGA1	O94964	1423 aa		28.84	■■■□□ 2.21
STRN4-222	ENST00000601869	CSRNP3	Q8WYN3	585 aa		28.8	■■■□□ 2.2
STRN4-222	ENST00000601869	TTBK1	Q5TCY1	1321 aa	Predicted RBP	28.78	■■■□□ 2.2
STRN4-222	ENST00000601869	KIF21B	O75037	1637 aa		28.74	■■■□□ 2.19
STRN4-222	ENST00000601869	CEP164	Q9UPV0	1460 aa		28.67	■■■□□ 2.18
STRN4-222	ENST00000601869	UBTF	P17480	764 aa	Known RBP	28.67	■■■□□ 2.18
STRN4-222	ENST00000601869	RUSC2	Q8N2Y8	1516 aa		28.61	■■■□□ 2.17
STRN4-222	ENST00000601869	VPS8	Q8N3P4	1428 aa		28.59	■■■□□ 2.17
STRN4-222	ENST00000601869	HMGXB3	Q12766	1538 aa		28.57	■■■□□ 2.16
STRN4-222	ENST00000601869	NCAPD3	P42695	1498 aa		28.57	■■■□□ 2.16
STRN4-222	ENST00000601869	CLIP1	P30622	1438 aa		28.53	■■■□□ 2.16
STRN4-222	ENST00000601869	SUPT16H	Q9Y5B9	1047 aa	Known RBP	28.52	■■■□□ 2.16
STRN4-222	ENST00000601869	HNRNPUL2	Q1KMD3	747 aa	Known RBP	28.51	■■■□□ 2.15
STRN4-222	ENST00000601869	SYNJ1	O43426	1573 aa		28.45	■■■□□ 2.15
STRN4-222	ENST00000601869	ANP32E	Q9BTT0	268 aa		28.37	■■■□□ 2.13
STRN4-222	ENST00000601869	APLP2	Q06481	763 aa		28.37	■■■□□ 2.13
STRN4-222	ENST00000601869	DHX57	Q6P158	1386 aa	Known RBP	28.33	■■■□□ 2.13
STRN4-222	ENST00000601869	TSHZ2	Q9NRE2	1034 aa		28.31	■■■□□ 2.12
STRN4-222	ENST00000601869	TOP2B	Q02880	1626 aa		28.22	■■■□□ 2.11
STRN4-222	ENST00000601869	CUX2	O14529	1486 aa		28.2	■■■□□ 2.1
STRN4-222	ENST00000601869	CFTR	P13569	1480 aa		28.17	■■■□□ 2.1
STRN4-222	ENST00000601869	RAPGEF2	Q9Y4G8	1499 aa		28.15	■■■□□ 2.1
STRN4-222	ENST00000601869	BIVM-ERCC5	R4GMW8	1640 aa		28.15	■■■□□ 2.1
STRN4-222	ENST00000601869	ERICH3	Q5RHP9	1530 aa		28.12	■■■□□ 2.09
STRN4-222	ENST00000601869	CC2D2A	Q9P2K1	1620 aa		28.11	■■■□□ 2.09
STRN4-222	ENST00000601869	RRBP1	Q9P2E9	1410 aa	Known RBP	28.1	■■■□□ 2.09
STRN4-222	ENST00000601869	CUX1	P39880	1505 aa		28.02	■■■□□ 2.08
STRN4-222	ENST00000601869	PRDM2	Q13029	1718 aa		28	■■■□□ 2.07
STRN4-222	ENST00000601869	ARAP1	Q96P48	1450 aa		27.99	■■■□□ 2.07
STRN4-222	ENST00000601869	BCL11A	Q9H165	835 aa		27.98	■■■□□ 2.07
STRN4-222	ENST00000601869	CADPS	Q9ULU8	1353 aa		27.93	■■■□□ 2.06
STRN4-222	ENST00000601869	PRX	Q9BXM0	1461 aa		27.9	■■■□□ 2.06
STRN4-222	ENST00000601869	CCNB3	Q8WWL7	1395 aa		27.83	■■■□□ 2.05
STRN4-222	ENST00000601869	MAPKBP1	O60336	1514 aa		27.78	■■■□□ 2.04
STRN4-222	ENST00000601869	KIF27	Q86VH2	1401 aa		27.77	■■■□□ 2.04
STRN4-222	ENST00000601869	NEFL	P07196	543 aa		27.73	■■■□□ 2.03
STRN4-222	ENST00000601869	KANK4	Q5T7N3	995 aa	Predicted RBP	27.73	■■■□□ 2.03
STRN4-222	ENST00000601869	FKBP8	Q14318	412 aa		27.72	■■■□□ 2.03
STRN4-222	ENST00000601869	MAP3K1	Q13233	1512 aa		27.7	■■■□□ 2.03
STRN4-222	ENST00000601869	RBM19	Q9Y4C8	960 aa	Known RBP	27.67	■■■□□ 2.02
STRN4-222	ENST00000601869	CCER2	I3L3R5	266 aa		27.66	■■■□□ 2.02
STRN4-222	ENST00000601869	FANCD2	Q9BXW9	1451 aa		27.65	■■■□□ 2.02

Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms