Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 DUX4L10-201ENST00000622460 1267 ntBASIC23.91■■□□□ 1.42
PKNOX1P55347 DUX4L25-201ENST00000624915 1269 ntBASIC23.91■■□□□ 1.42
PKNOX1P55347 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
PKNOX1P55347 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
PKNOX1P55347 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
PKNOX1P55347 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
PKNOX1P55347 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
PKNOX1P55347 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
PKNOX1P55347 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
PKNOX1P55347 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC23.9■■□□□ 1.42
PKNOX1P55347 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC23.89■■□□□ 1.42
PKNOX1P55347 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC23.89■■□□□ 1.42
PKNOX1P55347 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC23.89■■□□□ 1.41
PKNOX1P55347 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC23.89■■□□□ 1.41
PKNOX1P55347 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC23.89■■□□□ 1.41
PKNOX1P55347 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.41
PKNOX1P55347 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC23.88■■□□□ 1.41
PKNOX1P55347 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC23.88■■□□□ 1.41
PKNOX1P55347 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
PKNOX1P55347 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
PKNOX1P55347 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
PKNOX1P55347 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
PKNOX1P55347 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
PKNOX1P55347 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC23.87■■□□□ 1.41
PKNOX1P55347 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.41
PKNOX1P55347 AC008813.1-201ENST00000536597 885 ntBASIC23.87■■□□□ 1.41
PKNOX1P55347 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
PKNOX1P55347 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
PKNOX1P55347 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
PKNOX1P55347 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
PKNOX1P55347 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC23.87■■□□□ 1.41
PKNOX1P55347 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC23.87■■□□□ 1.41
PKNOX1P55347 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
PKNOX1P55347 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
PKNOX1P55347 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
PKNOX1P55347 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
PKNOX1P55347 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC23.86■■□□□ 1.41
PKNOX1P55347 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC23.86■■□□□ 1.41
PKNOX1P55347 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC23.86■■□□□ 1.41
PKNOX1P55347 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC23.86■■□□□ 1.41
PKNOX1P55347 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC23.86■■□□□ 1.41
PKNOX1P55347 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
PKNOX1P55347 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
PKNOX1P55347 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
PKNOX1P55347 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
PKNOX1P55347 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
PKNOX1P55347 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
PKNOX1P55347 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC23.85■■□□□ 1.41
PKNOX1P55347 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC23.85■■□□□ 1.41
PKNOX1P55347 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC23.84■■□□□ 1.41
PKNOX1P55347 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
PKNOX1P55347 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC23.84■■□□□ 1.41
PKNOX1P55347 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC23.84■■□□□ 1.41
PKNOX1P55347 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
PKNOX1P55347 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PKNOX1P55347 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
PKNOX1P55347 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PKNOX1P55347 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PKNOX1P55347 CHST11-202ENST00000546689 756 ntTSL 2 BASIC23.84■■□□□ 1.41
PKNOX1P55347 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC23.84■■□□□ 1.41
PKNOX1P55347 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
PKNOX1P55347 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC23.83■■□□□ 1.41
PKNOX1P55347 AC093323.1-202ENST00000635031 2045 ntBASIC23.83■■□□□ 1.41
PKNOX1P55347 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
PKNOX1P55347 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
PKNOX1P55347 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC23.83■■□□□ 1.41
PKNOX1P55347 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.41
PKNOX1P55347 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
PKNOX1P55347 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC23.83■■□□□ 1.4
PKNOX1P55347 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC23.83■■□□□ 1.4
PKNOX1P55347 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC23.83■■□□□ 1.4
PKNOX1P55347 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC23.82■■□□□ 1.4
PKNOX1P55347 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC23.82■■□□□ 1.4
PKNOX1P55347 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC23.82■■□□□ 1.4
PKNOX1P55347 DUX4L11-201ENST00000611504 1267 ntBASIC23.82■■□□□ 1.4
PKNOX1P55347 DUX4L12-201ENST00000614593 1267 ntBASIC23.82■■□□□ 1.4
PKNOX1P55347 DUX4L14-201ENST00000621227 1267 ntBASIC23.82■■□□□ 1.4
PKNOX1P55347 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
PKNOX1P55347 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
PKNOX1P55347 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC23.81■■□□□ 1.4
PKNOX1P55347 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC23.81■■□□□ 1.4
PKNOX1P55347 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
PKNOX1P55347 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC23.81■■□□□ 1.4
PKNOX1P55347 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
PKNOX1P55347 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC23.8■■□□□ 1.4
PKNOX1P55347 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
PKNOX1P55347 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PKNOX1P55347 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PKNOX1P55347 MLEC-202ENST00000412616 841 ntTSL 3 BASIC23.8■■□□□ 1.4
PKNOX1P55347 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC23.8■■□□□ 1.4
PKNOX1P55347 AC148477.6-201ENST00000623746 465 ntBASIC23.8■■□□□ 1.4
PKNOX1P55347 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
PKNOX1P55347 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
PKNOX1P55347 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
PKNOX1P55347 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC23.79■■□□□ 1.4
PKNOX1P55347 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
PKNOX1P55347 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
PKNOX1P55347 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
PKNOX1P55347 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PKNOX1P55347 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms