Protein–RNA interactions for Protein: P04440

HLA-DPB1, HLA class II histocompatibility antigen, DP beta 1 chain, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPB1P04440 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HLA-DPB1P04440 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
HLA-DPB1P04440 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HLA-DPB1P04440 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HLA-DPB1P04440 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
HLA-DPB1P04440 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
HLA-DPB1P04440 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HLA-DPB1P04440 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC21.9■■□□□ 1.1
HLA-DPB1P04440 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.1
HLA-DPB1P04440 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.1
HLA-DPB1P04440 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
HLA-DPB1P04440 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
HLA-DPB1P04440 MLEC-202ENST00000412616 841 ntTSL 3 BASIC21.89■■□□□ 1.09
HLA-DPB1P04440 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
HLA-DPB1P04440 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
HLA-DPB1P04440 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
HLA-DPB1P04440 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
HLA-DPB1P04440 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC21.88■■□□□ 1.09
HLA-DPB1P04440 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
HLA-DPB1P04440 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
HLA-DPB1P04440 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
HLA-DPB1P04440 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
HLA-DPB1P04440 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
HLA-DPB1P04440 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
HLA-DPB1P04440 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC21.87■■□□□ 1.09
HLA-DPB1P04440 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
HLA-DPB1P04440 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HLA-DPB1P04440 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC21.86■■□□□ 1.09
HLA-DPB1P04440 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC21.86■■□□□ 1.09
HLA-DPB1P04440 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
HLA-DPB1P04440 CEBPA-AS1-201ENST00000592982 2198 ntBASIC21.86■■□□□ 1.09
HLA-DPB1P04440 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
HLA-DPB1P04440 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
HLA-DPB1P04440 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC21.84■■□□□ 1.09
HLA-DPB1P04440 ABHD17AP4-201ENST00000411545 909 ntBASIC21.84■■□□□ 1.09
HLA-DPB1P04440 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC21.84■■□□□ 1.09
HLA-DPB1P04440 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
HLA-DPB1P04440 ZNRF2P2-203ENST00000454624 420 ntBASIC21.83■■□□□ 1.09
HLA-DPB1P04440 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.08
HLA-DPB1P04440 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC21.82■■□□□ 1.08
HLA-DPB1P04440 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HLA-DPB1P04440 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HLA-DPB1P04440 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC21.81■■□□□ 1.08
HLA-DPB1P04440 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HLA-DPB1P04440 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
HLA-DPB1P04440 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HLA-DPB1P04440 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HLA-DPB1P04440 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
HLA-DPB1P04440 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC21.8■■□□□ 1.08
HLA-DPB1P04440 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HLA-DPB1P04440 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC21.8■■□□□ 1.08
HLA-DPB1P04440 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HLA-DPB1P04440 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC21.79■■□□□ 1.08
HLA-DPB1P04440 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HLA-DPB1P04440 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HLA-DPB1P04440 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
HLA-DPB1P04440 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
HLA-DPB1P04440 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC21.78■■□□□ 1.08
HLA-DPB1P04440 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HLA-DPB1P04440 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HLA-DPB1P04440 ERN1-208ENST00000606895 2068 ntBASIC21.78■■□□□ 1.08
HLA-DPB1P04440 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
HLA-DPB1P04440 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC21.77■■□□□ 1.08
HLA-DPB1P04440 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HLA-DPB1P04440 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
HLA-DPB1P04440 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.07
HLA-DPB1P04440 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
HLA-DPB1P04440 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.07
HLA-DPB1P04440 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
HLA-DPB1P04440 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
HLA-DPB1P04440 LINC01971-201ENST00000617888 1048 ntBASIC21.76■■□□□ 1.07
HLA-DPB1P04440 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
HLA-DPB1P04440 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC21.76■■□□□ 1.07
HLA-DPB1P04440 LTK-203ENST00000453182 2412 ntTSL 2 BASIC21.76■■□□□ 1.07
HLA-DPB1P04440 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
HLA-DPB1P04440 AC142472.1-201ENST00000612013 1741 ntBASIC21.75■■□□□ 1.07
HLA-DPB1P04440 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC21.75■■□□□ 1.07
HLA-DPB1P04440 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HLA-DPB1P04440 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
HLA-DPB1P04440 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC21.75■■□□□ 1.07
HLA-DPB1P04440 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
HLA-DPB1P04440 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.75■■□□□ 1.07
HLA-DPB1P04440 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC21.74■■□□□ 1.07
HLA-DPB1P04440 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
HLA-DPB1P04440 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HLA-DPB1P04440 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
HLA-DPB1P04440 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HLA-DPB1P04440 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HLA-DPB1P04440 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
HLA-DPB1P04440 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HLA-DPB1P04440 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HLA-DPB1P04440 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HLA-DPB1P04440 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HLA-DPB1P04440 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC21.72■■□□□ 1.07
HLA-DPB1P04440 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HLA-DPB1P04440 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.72■■□□□ 1.07
HLA-DPB1P04440 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
HLA-DPB1P04440 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HLA-DPB1P04440 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HLA-DPB1P04440 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms