Protein–RNA interactions for Protein: O14646

CHD1, Chromodomain-helicase-DNA-binding protein 1, humanhuman

Predictions only

Length 1,710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1O14646 AL139246.5-201ENST00000606645 996 ntBASIC41.13■■■■■ 4.18
CHD1O14646 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC41.12■■■■■ 4.17
CHD1O14646 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC41.12■■■■■ 4.17
CHD1O14646 AC019171.1-201ENST00000601251 1056 ntBASIC41.11■■■■■ 4.17
CHD1O14646 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC41.11■■■■■ 4.17
CHD1O14646 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC41.1■■■■■ 4.17
CHD1O14646 LONRF2P2-201ENST00000439212 571 ntBASIC41.1■■■■■ 4.17
CHD1O14646 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC41.09■■■■■ 4.17
CHD1O14646 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC41.09■■■■■ 4.17
CHD1O14646 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC41.07■■■■■ 4.17
CHD1O14646 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC41.07■■■■■ 4.16
CHD1O14646 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC41.07■■■■■ 4.16
CHD1O14646 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC41.07■■■■■ 4.16
CHD1O14646 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC41.06■■■■■ 4.16
CHD1O14646 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC41.06■■■■■ 4.16
CHD1O14646 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC41.06■■■■■ 4.16
CHD1O14646 MIR4787-201ENST00000607364 84 ntBASIC41.06■■■■■ 4.16
CHD1O14646 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC41.05■■■■■ 4.16
CHD1O14646 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC41.04■■■■■ 4.16
CHD1O14646 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC41.04■■■■■ 4.16
CHD1O14646 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC41.04■■■■■ 4.16
CHD1O14646 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC41.03■■■■■ 4.16
CHD1O14646 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC41.03■■■■■ 4.16
CHD1O14646 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC41.02■■■■■ 4.16
CHD1O14646 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC41.02■■■■■ 4.16
CHD1O14646 NALT1-201ENST00000429224 738 ntTSL 5 BASIC41.01■■■■■ 4.16
CHD1O14646 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC41.01■■■■■ 4.16
CHD1O14646 AC110285.6-201ENST00000617652 491 ntBASIC41.01■■■■■ 4.16
CHD1O14646 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC41■■■■■ 4.15
CHD1O14646 BX664725.1-201ENST00000438252 379 ntBASIC40.99■■■■■ 4.15
CHD1O14646 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC40.98■■■■■ 4.15
CHD1O14646 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC40.98■■■■■ 4.15
CHD1O14646 TRIR-202ENST00000588213 841 ntTSL 3 BASIC40.98■■■■■ 4.15
CHD1O14646 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC40.98■■■■■ 4.15
CHD1O14646 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC40.97■■■■■ 4.15
CHD1O14646 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC40.97■■■■■ 4.15
CHD1O14646 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC40.96■■■■■ 4.15
CHD1O14646 RARRES2P6-201ENST00000567333 442 ntBASIC40.96■■■■■ 4.15
CHD1O14646 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC40.96■■■■■ 4.15
CHD1O14646 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC40.96■■■■■ 4.15
CHD1O14646 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC40.96■■■■■ 4.15
CHD1O14646 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC40.96■■■■■ 4.15
CHD1O14646 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC40.96■■■■■ 4.15
CHD1O14646 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC40.95■■■■■ 4.15
CHD1O14646 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC40.95■■■■■ 4.15
CHD1O14646 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC40.95■■■■■ 4.15
CHD1O14646 KRT125P-201ENST00000546827 989 ntBASIC40.95■■■■■ 4.15
CHD1O14646 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC40.94■■■■■ 4.14
CHD1O14646 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC40.94■■■■■ 4.14
CHD1O14646 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC40.94■■■■■ 4.14
CHD1O14646 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC40.94■■■■■ 4.14
CHD1O14646 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC40.94■■■■■ 4.14
CHD1O14646 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC40.93■■■■■ 4.14
CHD1O14646 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC40.93■■■■■ 4.14
CHD1O14646 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC40.93■■■■■ 4.14
CHD1O14646 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC40.93■■■■■ 4.14
CHD1O14646 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC40.92■■■■■ 4.14
CHD1O14646 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC40.91■■■■■ 4.14
CHD1O14646 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC40.91■■■■■ 4.14
CHD1O14646 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC40.91■■■■■ 4.14
CHD1O14646 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC40.91■■■■■ 4.14
CHD1O14646 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC40.91■■■■■ 4.14
CHD1O14646 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC40.91■■■■■ 4.14
CHD1O14646 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC40.91■■■■■ 4.14
CHD1O14646 AC087393.1-201ENST00000582896 145 ntBASIC40.9■■■■■ 4.14
CHD1O14646 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC40.9■■■■■ 4.14
CHD1O14646 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC40.9■■■■■ 4.14
CHD1O14646 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC40.9■■■■■ 4.14
CHD1O14646 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC40.88■■■■■ 4.13
CHD1O14646 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC40.88■■■■■ 4.13
CHD1O14646 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC40.87■■■■■ 4.13
CHD1O14646 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC40.87■■■■■ 4.13
CHD1O14646 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC40.87■■■■■ 4.13
CHD1O14646 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC40.86■■■■■ 4.13
CHD1O14646 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC40.86■■■■■ 4.13
CHD1O14646 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC40.86■■■■■ 4.13
CHD1O14646 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC40.85■■■■■ 4.13
CHD1O14646 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC40.84■■■■■ 4.13
CHD1O14646 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC40.84■■■■■ 4.13
CHD1O14646 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC40.84■■■■■ 4.13
CHD1O14646 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC40.84■■■■■ 4.13
CHD1O14646 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC40.84■■■■■ 4.13
CHD1O14646 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC40.83■■■■■ 4.13
CHD1O14646 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC40.83■■■■■ 4.13
CHD1O14646 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC40.83■■■■■ 4.13
CHD1O14646 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC40.83■■■■■ 4.13
CHD1O14646 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC40.82■■■■■ 4.13
CHD1O14646 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC40.82■■■■■ 4.13
CHD1O14646 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC40.81■■■■■ 4.12
CHD1O14646 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC40.81■■■■■ 4.12
CHD1O14646 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC40.81■■■■■ 4.12
CHD1O14646 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC40.81■■■■■ 4.12
CHD1O14646 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC40.8■■■■■ 4.12
CHD1O14646 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC40.79■■■■■ 4.12
CHD1O14646 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC40.79■■■■■ 4.12
CHD1O14646 AL136116.3-201ENST00000402907 1138 ntBASIC40.77■■■■■ 4.12
CHD1O14646 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC40.77■■■■■ 4.12
CHD1O14646 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC40.76■■■■■ 4.12
CHD1O14646 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC40.76■■■■■ 4.12
CHD1O14646 GUK1-205ENST00000366722 850 ntTSL 3 BASIC40.76■■■■■ 4.12
Retrieved 100 of 98,524 protein–RNA pairs in 1013.8 ms