Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
SLC44A3Q8N4M1 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SLC44A3Q8N4M1 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SLC44A3Q8N4M1 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SLC44A3Q8N4M1 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SLC44A3Q8N4M1 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SLC44A3Q8N4M1 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
SLC44A3Q8N4M1 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SLC44A3Q8N4M1 AC148477.5-201ENST00000625164 1645 ntBASIC18.16■□□□□ 0.5
SLC44A3Q8N4M1 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
SLC44A3Q8N4M1 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SLC44A3Q8N4M1 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SLC44A3Q8N4M1 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SLC44A3Q8N4M1 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SLC44A3Q8N4M1 ESPNP-201ENST00000270691 2015 ntBASIC18.15■□□□□ 0.5
SLC44A3Q8N4M1 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC18.15■□□□□ 0.5
SLC44A3Q8N4M1 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
SLC44A3Q8N4M1 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
SLC44A3Q8N4M1 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SLC44A3Q8N4M1 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SLC44A3Q8N4M1 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC18.15■□□□□ 0.5
SLC44A3Q8N4M1 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC18.15■□□□□ 0.5
SLC44A3Q8N4M1 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
SLC44A3Q8N4M1 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC18.15■□□□□ 0.5
SLC44A3Q8N4M1 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SLC44A3Q8N4M1 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC18.15■□□□□ 0.5
SLC44A3Q8N4M1 AC027612.4-201ENST00000605371 583 ntBASIC18.15■□□□□ 0.5
SLC44A3Q8N4M1 AC004877.2-201ENST00000623941 599 ntBASIC18.15■□□□□ 0.5
SLC44A3Q8N4M1 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC18.15■□□□□ 0.5
SLC44A3Q8N4M1 AL049757.1-201ENST00000616842 1596 ntBASIC18.15■□□□□ 0.5
SLC44A3Q8N4M1 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.15■□□□□ 0.5
SLC44A3Q8N4M1 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
SLC44A3Q8N4M1 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
SLC44A3Q8N4M1 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SLC44A3Q8N4M1 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
SLC44A3Q8N4M1 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SLC44A3Q8N4M1 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SLC44A3Q8N4M1 AC005332.7-201ENST00000614046 2005 ntBASIC18.15■□□□□ 0.5
SLC44A3Q8N4M1 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC18.15■□□□□ 0.5
SLC44A3Q8N4M1 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.5
SLC44A3Q8N4M1 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.14■□□□□ 0.5
SLC44A3Q8N4M1 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
SLC44A3Q8N4M1 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
SLC44A3Q8N4M1 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
SLC44A3Q8N4M1 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
SLC44A3Q8N4M1 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SLC44A3Q8N4M1 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
SLC44A3Q8N4M1 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
SLC44A3Q8N4M1 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
SLC44A3Q8N4M1 IGLL3P-201ENST00000412472 434 ntBASIC18.14■□□□□ 0.49
SLC44A3Q8N4M1 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC18.14■□□□□ 0.49
SLC44A3Q8N4M1 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC18.14■□□□□ 0.49
SLC44A3Q8N4M1 PUS1-205ENST00000535067 838 ntTSL 3 BASIC18.14■□□□□ 0.49
SLC44A3Q8N4M1 PDPK2P-202ENST00000562415 1191 ntBASIC18.14■□□□□ 0.49
SLC44A3Q8N4M1 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC18.14■□□□□ 0.49
SLC44A3Q8N4M1 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC18.14■□□□□ 0.49
SLC44A3Q8N4M1 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SLC44A3Q8N4M1 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SLC44A3Q8N4M1 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
SLC44A3Q8N4M1 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SLC44A3Q8N4M1 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
SLC44A3Q8N4M1 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
SLC44A3Q8N4M1 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SLC44A3Q8N4M1 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SLC44A3Q8N4M1 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SLC44A3Q8N4M1 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SLC44A3Q8N4M1 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
SLC44A3Q8N4M1 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
SLC44A3Q8N4M1 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
SLC44A3Q8N4M1 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.13■□□□□ 0.49
SLC44A3Q8N4M1 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SLC44A3Q8N4M1 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SLC44A3Q8N4M1 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SLC44A3Q8N4M1 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC18.13■□□□□ 0.49
SLC44A3Q8N4M1 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC18.13■□□□□ 0.49
SLC44A3Q8N4M1 WDR53-203ENST00000429115 683 ntTSL 2 BASIC18.13■□□□□ 0.49
SLC44A3Q8N4M1 SIGLEC30P-201ENST00000455569 941 ntBASIC18.13■□□□□ 0.49
SLC44A3Q8N4M1 CD63-210ENST00000550776 870 ntTSL 5 BASIC18.13■□□□□ 0.49
SLC44A3Q8N4M1 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC18.13■□□□□ 0.49
SLC44A3Q8N4M1 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC18.13■□□□□ 0.49
SLC44A3Q8N4M1 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC18.13■□□□□ 0.49
SLC44A3Q8N4M1 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SLC44A3Q8N4M1 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SLC44A3Q8N4M1 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
SLC44A3Q8N4M1 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SLC44A3Q8N4M1 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SLC44A3Q8N4M1 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SLC44A3Q8N4M1 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
SLC44A3Q8N4M1 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SLC44A3Q8N4M1 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.13■□□□□ 0.49
SLC44A3Q8N4M1 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC18.13■□□□□ 0.49
SLC44A3Q8N4M1 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
SLC44A3Q8N4M1 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.12■□□□□ 0.49
SLC44A3Q8N4M1 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.12■□□□□ 0.49
SLC44A3Q8N4M1 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SLC44A3Q8N4M1 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
SLC44A3Q8N4M1 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
SLC44A3Q8N4M1 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SLC44A3Q8N4M1 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
SLC44A3Q8N4M1 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 64.7 ms