Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
BDNFP23560 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
BDNFP23560 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
BDNFP23560 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
BDNFP23560 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC18.77■□□□□ 0.6
BDNFP23560 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
BDNFP23560 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
BDNFP23560 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC18.77■□□□□ 0.6
BDNFP23560 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC18.77■□□□□ 0.6
BDNFP23560 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC18.77■□□□□ 0.6
BDNFP23560 MTDHP3-201ENST00000594186 672 ntBASIC18.77■□□□□ 0.6
BDNFP23560 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
BDNFP23560 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
BDNFP23560 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
BDNFP23560 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
BDNFP23560 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
BDNFP23560 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
BDNFP23560 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
BDNFP23560 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
BDNFP23560 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.77■□□□□ 0.59
BDNFP23560 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
BDNFP23560 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
BDNFP23560 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
BDNFP23560 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
BDNFP23560 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
BDNFP23560 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
BDNFP23560 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
BDNFP23560 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
BDNFP23560 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
BDNFP23560 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
BDNFP23560 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC18.76■□□□□ 0.59
BDNFP23560 ABCD1P5-201ENST00000445663 754 ntBASIC18.76■□□□□ 0.59
BDNFP23560 RBSN-204ENST00000449050 903 ntTSL 2 BASIC18.76■□□□□ 0.59
BDNFP23560 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC18.76■□□□□ 0.59
BDNFP23560 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC18.76■□□□□ 0.59
BDNFP23560 AC106795.1-205ENST00000512851 1056 ntBASIC18.76■□□□□ 0.59
BDNFP23560 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
BDNFP23560 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
BDNFP23560 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
BDNFP23560 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC18.76■□□□□ 0.59
BDNFP23560 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC18.76■□□□□ 0.59
BDNFP23560 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
BDNFP23560 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC18.76■□□□□ 0.59
BDNFP23560 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
BDNFP23560 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
BDNFP23560 TP73-AS1-207ENST00000624167 988 ntBASIC18.76■□□□□ 0.59
BDNFP23560 VPS51-217ENST00000639871 243 ntTSL 5 BASIC18.76■□□□□ 0.59
BDNFP23560 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
BDNFP23560 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
BDNFP23560 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
BDNFP23560 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
BDNFP23560 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC18.76■□□□□ 0.59
BDNFP23560 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
BDNFP23560 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.76■□□□□ 0.59
BDNFP23560 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
BDNFP23560 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
BDNFP23560 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.76■□□□□ 0.59
BDNFP23560 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
BDNFP23560 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC18.76■□□□□ 0.59
BDNFP23560 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
BDNFP23560 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
BDNFP23560 AP005117.1-201ENST00000584346 1413 ntBASIC18.75■□□□□ 0.59
BDNFP23560 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
BDNFP23560 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
BDNFP23560 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC18.75■□□□□ 0.59
BDNFP23560 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
BDNFP23560 AC138932.1-201ENST00000534164 6830 ntBASIC18.75■□□□□ 0.59
BDNFP23560 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC18.75■□□□□ 0.59
BDNFP23560 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
BDNFP23560 CD9-202ENST00000382515 1229 ntTSL 5 BASIC18.75■□□□□ 0.59
BDNFP23560 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.75■□□□□ 0.59
BDNFP23560 PON3-205ENST00000451904 1053 ntTSL 3 BASIC18.75■□□□□ 0.59
BDNFP23560 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.75■□□□□ 0.59
BDNFP23560 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC18.75■□□□□ 0.59
BDNFP23560 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC18.75■□□□□ 0.59
BDNFP23560 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC18.75■□□□□ 0.59
BDNFP23560 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
BDNFP23560 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC18.75■□□□□ 0.59
BDNFP23560 AL355877.3-201ENST00000622820 899 ntBASIC18.75■□□□□ 0.59
BDNFP23560 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC18.75■□□□□ 0.59
BDNFP23560 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.75■□□□□ 0.59
BDNFP23560 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
BDNFP23560 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
BDNFP23560 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.75■□□□□ 0.59
BDNFP23560 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
BDNFP23560 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
BDNFP23560 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
BDNFP23560 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC18.75■□□□□ 0.59
BDNFP23560 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
BDNFP23560 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
BDNFP23560 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
BDNFP23560 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.75■□□□□ 0.59
BDNFP23560 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
BDNFP23560 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC18.74■□□□□ 0.59
BDNFP23560 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
BDNFP23560 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC18.74■□□□□ 0.59
BDNFP23560 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC18.74■□□□□ 0.59
BDNFP23560 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
BDNFP23560 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC18.74■□□□□ 0.59
BDNFP23560 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms