RNA–Protein interactions for RNA: ENST00000311350.7

HERPUD2-201, Transcript of HERPUD family member 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HERPUD2, Length 2,474 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2-201ENST00000311350 NISCHQ9Y2I1 1504 aa39.46■■■■□ 3.91
HERPUD2-201ENST00000311350 CCDC180Q9P1Z9 1646 aa35.12■■■■□ 3.21
HERPUD2-201ENST00000311350 ABCC9O60706 1549 aa34.65■■■■□ 3.14
HERPUD2-201ENST00000311350 RB1CC1Q8TDY2 1594 aa33.21■■■□□ 2.91
HERPUD2-201ENST00000311350 NACADO15069 1562 aa33.12■■■□□ 2.89
HERPUD2-201ENST00000311350 DCAF8L2P0C7V8 631 aa33.1■■■□□ 2.89
HERPUD2-201ENST00000311350 MYO15BQ96JP2 1530 aa32.86■■■□□ 2.85
HERPUD2-201ENST00000311350 ZCCHC6Q5VYS8 1495 aaKnown RBP32.82■■■□□ 2.84
HERPUD2-201ENST00000311350 DCAF1Q9Y4B6 1507 aa32.63■■■□□ 2.81
HERPUD2-201ENST00000311350 UNC13AQ9UPW8 1703 aa32.37■■■□□ 2.77
HERPUD2-201ENST00000311350 PABPN1Q86U42 306 aaKnown RBP eCLIP32.37■■■□□ 2.77
HERPUD2-201ENST00000311350 BICRAQ9NZM4 1560 aa32.2■■■□□ 2.75
HERPUD2-201ENST00000311350 SHROOM4Q9ULL8 1493 aa32.18■■■□□ 2.74
HERPUD2-201ENST00000311350 SCRIBQ14160 1630 aa32.06■■■□□ 2.72
HERPUD2-201ENST00000311350 DNAJC5BQ9UF47 199 aa32.02■■■□□ 2.72
HERPUD2-201ENST00000311350 HRCP23327 699 aa31.73■■■□□ 2.67
HERPUD2-201ENST00000311350 SUPT5HO00267 1087 aaKnown RBP31.71■■■□□ 2.67
HERPUD2-201ENST00000311350 EIF4G1Q04637 1599 aaKnown RBP31.39■■■□□ 2.61
HERPUD2-201ENST00000311350 CC2D2AQ9P2K1 1620 aa31.31■■■□□ 2.6
HERPUD2-201ENST00000311350 PPARGC1BQ86YN6 1023 aaKnown RBP31.27■■■□□ 2.6
HERPUD2-201ENST00000311350 CHIC1Q5VXU3 224 aa31.2■■■□□ 2.58
HERPUD2-201ENST00000311350 PCGF6Q9BYE7 350 aa31.19■■■□□ 2.58
HERPUD2-201ENST00000311350 CECR2Q9BXF3 1484 aa31.16■■■□□ 2.58
HERPUD2-201ENST00000311350 SMARCA4P51532 1647 aa30.64■■■□□ 2.5
HERPUD2-201ENST00000311350 BAZ1AQ9NRL2 1556 aaPredicted RBP30.6■■■□□ 2.49
HERPUD2-201ENST00000311350 NCAPD3P42695 1498 aa30.58■■■□□ 2.49
HERPUD2-201ENST00000311350 ATAD2BQ9ULI0 1458 aa30.57■■■□□ 2.48
HERPUD2-201ENST00000311350 SMARCA2P51531 1590 aa30.5■■■□□ 2.47
HERPUD2-201ENST00000311350 MROH2BQ7Z745 1585 aa30.41■■■□□ 2.46
HERPUD2-201ENST00000311350 HMGXB3Q12766 1538 aa30.39■■■□□ 2.46
HERPUD2-201ENST00000311350 PEG3Q9GZU2 1588 aa30.36■■■□□ 2.45
HERPUD2-201ENST00000311350 PELP1Q8IZL8 1130 aaKnown RBP30.34■■■□□ 2.45
HERPUD2-201ENST00000311350 BAZ1BQ9UIG0 1483 aaKnown RBP30.3■■■□□ 2.44
HERPUD2-201ENST00000311350 LOC105371045A0A1W2PR82 267 aa30.27■■■□□ 2.44
HERPUD2-201ENST00000311350 RSF1Q96T23 1441 aaPredicted RBP30.18■■■□□ 2.42
HERPUD2-201ENST00000311350 SCAF1Q9H7N4 1312 aaKnown RBP30.09■■■□□ 2.41
HERPUD2-201ENST00000311350 TRIM26Q12899 539 aaPredicted RBP30.06■■■□□ 2.4
HERPUD2-201ENST00000311350 WIZO95785 1651 aa30.04■■■□□ 2.4
HERPUD2-201ENST00000311350 NESP48681 1621 aa29.91■■■□□ 2.38
HERPUD2-201ENST00000311350 ERCC6Q03468 1493 aa29.89■■■□□ 2.38
HERPUD2-201ENST00000311350 LAMC3Q9Y6N6 1575 aa29.79■■■□□ 2.36
HERPUD2-201ENST00000311350 TOP2AP11388 1531 aaKnown RBP29.73■■■□□ 2.35
HERPUD2-201ENST00000311350 TRIM41Q8WV44 630 aa29.7■■■□□ 2.34
HERPUD2-201ENST00000311350 ZEB1P37275 1124 aaPredicted RBP29.69■■■□□ 2.34
HERPUD2-201ENST00000311350 CADPSQ9ULU8 1353 aa29.69■■■□□ 2.34
HERPUD2-201ENST00000311350 CUX2O14529 1486 aa29.64■■■□□ 2.34
HERPUD2-201ENST00000311350 PDS5BQ9NTI5 1447 aa29.63■■■□□ 2.33
HERPUD2-201ENST00000311350 KIF21AQ7Z4S6 1674 aa29.49■■■□□ 2.31
HERPUD2-201ENST00000311350 THOC2Q8NI27 1593 aaKnown RBP29.48■■■□□ 2.31
HERPUD2-201ENST00000311350 CFTRP13569 1480 aa29.46■■■□□ 2.31
HERPUD2-201ENST00000311350 CCDC88BA6NC98 1476 aa29.39■■■□□ 2.3
HERPUD2-201ENST00000311350 FANCD2Q9BXW9 1451 aa29.35■■■□□ 2.29
HERPUD2-201ENST00000311350 MRC2Q9UBG0 1479 aa29.33■■■□□ 2.29
HERPUD2-201ENST00000311350 CEP164Q9UPV0 1460 aa29.33■■■□□ 2.29
HERPUD2-201ENST00000311350 NEUROD1Q13562 356 aa29.29■■■□□ 2.28
HERPUD2-201ENST00000311350 ACIN1Q9UKV3 1341 aaKnown RBP29.28■■■□□ 2.28
HERPUD2-201ENST00000311350 WDR62O43379 1518 aa29.22■■■□□ 2.27
HERPUD2-201ENST00000311350 FAM9AQ8IZU1 332 aaPredicted RBP29.2■■■□□ 2.26
HERPUD2-201ENST00000311350 PRDM2Q13029 1718 aa29.11■■■□□ 2.25
HERPUD2-201ENST00000311350 GTF3C3Q9Y5Q9 886 aa29.1■■■□□ 2.25
HERPUD2-201ENST00000311350 EHMT2Q96KQ7 1210 aa29.09■■■□□ 2.25
HERPUD2-201ENST00000311350 URB2Q14146 1524 aaKnown RBP29.06■■■□□ 2.24
HERPUD2-201ENST00000311350 MYT1Q01538 1121 aa29.05■■■□□ 2.24
HERPUD2-201ENST00000311350 DNAJC5Q9H3Z4 198 aa29.02■■■□□ 2.24
HERPUD2-201ENST00000311350 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.94■■■□□ 2.22
HERPUD2-201ENST00000311350 WRNQ14191 1432 aaPredicted RBP eCLIP28.84■■■□□ 2.21
HERPUD2-201ENST00000311350 TOPBP1Q92547 1522 aa28.84■■■□□ 2.21
HERPUD2-201ENST00000311350 ABCC8Q09428 1581 aa28.82■■■□□ 2.2
HERPUD2-201ENST00000311350 DIEXFQ68CQ4 756 aaKnown RBP28.81■■■□□ 2.2
HERPUD2-201ENST00000311350 CENPBP07199 599 aaPredicted RBP28.8■■■□□ 2.2
HERPUD2-201ENST00000311350 CCER1Q8TC90 406 aaPredicted RBP28.79■■■□□ 2.2
HERPUD2-201ENST00000311350 DNMBPQ6XZF7 1577 aa28.77■■■□□ 2.2
HERPUD2-201ENST00000311350 EEA1Q15075 1411 aa28.76■■■□□ 2.19
HERPUD2-201ENST00000311350 IFT140Q96RY7 1462 aa28.72■■■□□ 2.19
HERPUD2-201ENST00000311350 TNIKQ9UKE5 1360 aa28.65■■■□□ 2.18
HERPUD2-201ENST00000311350 ZNF608Q9ULD9 1512 aaPredicted RBP28.61■■■□□ 2.17
HERPUD2-201ENST00000311350 CEP162Q5TB80 1403 aa28.59■■■□□ 2.17
HERPUD2-201ENST00000311350 POLA1P09884 1462 aaPredicted RBP28.59■■■□□ 2.17
HERPUD2-201ENST00000311350 CUX1P39880 1505 aa28.54■■■□□ 2.16
HERPUD2-201ENST00000311350 TARBP1Q13395 1621 aaKnown RBP28.52■■■□□ 2.16
HERPUD2-201ENST00000311350 SOGA1O94964 1423 aa28.5■■■□□ 2.15
HERPUD2-201ENST00000311350 FGD5Q6ZNL6 1462 aa28.48■■■□□ 2.15
HERPUD2-201ENST00000311350 RAD54L2Q9Y4B4 1467 aa28.47■■■□□ 2.15
HERPUD2-201ENST00000311350 EIF4G3O43432 1585 aaKnown RBP28.46■■■□□ 2.15
HERPUD2-201ENST00000311350 YTHDC1Q96MU7 727 aaKnown RBP28.45■■■□□ 2.14
HERPUD2-201ENST00000311350 CSRNP3Q8WYN3 585 aa28.44■■■□□ 2.14
HERPUD2-201ENST00000311350 AQRO60306 1485 aaKnown RBP eCLIP28.43■■■□□ 2.14
HERPUD2-201ENST00000311350 GOLGA3Q08378 1498 aa28.42■■■□□ 2.14
HERPUD2-201ENST00000311350 OSCARQ8IYS5 282 aa28.4■■■□□ 2.14
HERPUD2-201ENST00000311350 TTBK1Q5TCY1 1321 aaPredicted RBP28.37■■■□□ 2.13
HERPUD2-201ENST00000311350 TDRD9Q8NDG6 1382 aaKnown RBP28.35■■■□□ 2.13
HERPUD2-201ENST00000311350 RUSC2Q8N2Y8 1516 aa28.3■■■□□ 2.12
HERPUD2-201ENST00000311350 KIF21BO75037 1637 aa28.29■■■□□ 2.12
HERPUD2-201ENST00000311350 WDR97A6NE52 1622 aa28.28■■■□□ 2.12
HERPUD2-201ENST00000311350 ZNF316A6NFI3 1004 aaPredicted RBP28.23■■■□□ 2.11
HERPUD2-201ENST00000311350 TOP2BQ02880 1626 aa28.22■■■□□ 2.11
HERPUD2-201ENST00000311350 SYNJ1O43426 1573 aa28.2■■■□□ 2.1
HERPUD2-201ENST00000311350 ABCA10Q8WWZ4 1543 aa28.2■■■□□ 2.1
HERPUD2-201ENST00000311350 BIVM-ERCC5R4GMW8 1640 aa28.2■■■□□ 2.1
HERPUD2-201ENST00000311350 UBTFP17480 764 aaKnown RBP28.19■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms