Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 LDHA-216ENST00000538451 1345 ntTSL 213.17□□□□□ -0.31e-6■■□□□ 13.1
UPF1Q92900 PLSCR4-201ENST00000354952 3303 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.321e-6■■□□□ 13.1
UPF1Q92900 LDHA-223ENST00000545215 1340 ntTSL 1 (best)12.44□□□□□ -0.421e-6■■□□□ 13.1
UPF1Q92900 LDHA-218ENST00000540430 2305 ntTSL 2 BASIC12.28□□□□□ -0.441e-6■■□□□ 13.1
UPF1Q92900 PLSCR4-203ENST00000433593 2839 ntTSL 2 BASIC12.2□□□□□ -0.461e-6■■□□□ 13.1
UPF1Q92900 TGFA-201ENST00000295400 4310 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.571e-6■■□□□ 13.1
UPF1Q92900 LDHA-201ENST00000227157 1887 ntTSL 3 BASIC10.68□□□□□ -0.71e-6■■□□□ 13.1
UPF1Q92900 LDHA-206ENST00000430553 1310 ntTSL 2 BASIC10.07□□□□□ -0.81e-6■■□□□ 13.1
UPF1Q92900 LDHA-202ENST00000375710 2169 ntTSL 29.41□□□□□ -0.91e-6■■□□□ 13.1
UPF1Q92900 LDHA-204ENST00000396222 1766 ntTSL 2 BASIC8.84□□□□□ -0.991e-6■■□□□ 13.1
UPF1Q92900 NFAT5-204ENST00000426654 14219 ntTSL 1 (best)7.66□□□□□ -1.181e-12■■□□□ 13.1
UPF1Q92900 NFAT5-201ENST00000349945 13362 ntAPPRIS ALT1 TSL 1 (best) BASIC7.46□□□□□ -1.221e-12■■□□□ 13.1
UPF1Q92900 NFAT5-202ENST00000354436 13229 ntAPPRIS P4 TSL 1 (best) BASIC7.09□□□□□ -1.271e-12■■□□□ 13.1
UPF1Q92900 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.36□□□□□ -1.711e-12■■□□□ 13.1
UPF1Q92900 NDRG3-204ENST00000373803 2978 ntTSL 5 BASIC8.18□□□□□ -1.13e-12■■□□□ 13.1
UPF1Q92900 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC7.82□□□□□ -1.163e-12■■□□□ 13.1
UPF1Q92900 NDRG3-203ENST00000373773 2098 ntTSL 1 (best) BASIC7.74□□□□□ -1.173e-12■■□□□ 13.1
UPF1Q92900 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC7.01□□□□□ -1.293e-12■■□□□ 13.1
UPF1Q92900 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC17.02■□□□□ 0.324e-8■■□□□ 13.1
UPF1Q92900 ARHGAP45-215ENST00000592297 1563 ntTSL 229.46■■■□□ 2.314e-6■■□□□ 13.1
UPF1Q92900 ARHGAP45-213ENST00000591169 1284 ntTSL 228.91■■■□□ 2.224e-6■■□□□ 13.1
UPF1Q92900 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC16.05■□□□□ 0.164e-6■■□□□ 13.1
UPF1Q92900 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.094e-6■■□□□ 13.1
UPF1Q92900 ARHGAP45-203ENST00000543365 3750 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.074e-6■■□□□ 13.1
UPF1Q92900 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.094e-6■■□□□ 13.1
UPF1Q92900 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.144e-6■■□□□ 13.1
UPF1Q92900 ARHGAP45-210ENST00000590214 4191 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.24e-6■■□□□ 13.1
UPF1Q92900 ARHGAP45-209ENST00000587602 3875 ntTSL 213.36□□□□□ -0.274e-6■■□□□ 13.1
UPF1Q92900 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.986e-17■■□□□ 13.1
UPF1Q92900 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.936e-17■■□□□ 13.1
UPF1Q92900 DNM1L-202ENST00000358214 3229 ntTSL 5 BASIC8.31□□□□□ -1.081e-10■■□□□ 13.1
UPF1Q92900 HIST1H2AC-201ENST00000314088 1668 ntTSL 1 (best)22.13■■□□□ 1.133e-14■■□□□ 13.1
UPF1Q92900 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.113e-14■■□□□ 13.1
UPF1Q92900 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.983e-14■■□□□ 13.1
UPF1Q92900 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC18.13■□□□□ 0.496e-10■■□□□ 13.1
UPF1Q92900 IMMT-204ENST00000410111 3001 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.016e-10■■□□□ 13.1
UPF1Q92900 AMD1-201ENST00000368876 3040 ntTSL 5 BASIC14.21□□□□□ -0.137e-9■■□□□ 13.1
UPF1Q92900 IMMT-206ENST00000442664 2627 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.216e-10■■□□□ 13.1
UPF1Q92900 IMMT-202ENST00000409051 2515 ntTSL 2 BASIC13.17□□□□□ -0.36e-10■■□□□ 13.1
UPF1Q92900 IMMT-207ENST00000449247 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC12.1□□□□□ -0.476e-10■■□□□ 13.1
UPF1Q92900 IMMT-201ENST00000254636 2613 ntTSL 5 BASIC10.07□□□□□ -0.86e-10■■□□□ 13.1
UPF1Q92900 AMD1-205ENST00000451850 3121 ntTSL 1 (best)9.02□□□□□ -0.977e-9■■□□□ 13.1
UPF1Q92900 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.977e-9■■□□□ 13.1
UPF1Q92900 IMMT-205ENST00000419070 2172 ntTSL 58.77□□□□□ -1.016e-10■■□□□ 13.1
UPF1Q92900 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC8.67□□□□□ -1.027e-9■■□□□ 13.1
UPF1Q92900 AMD1-207ENST00000612642 4745 ntTSL 1 (best)7.28□□□□□ -1.247e-9■■□□□ 13.1
UPF1Q92900 AMD1-208ENST00000619590 4329 ntTSL 27.08□□□□□ -1.287e-9■■□□□ 13.1
UPF1Q92900 MED1-201ENST00000300651 5844 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.346e-10■■□□□ 13.1
UPF1Q92900 TMPO-212ENST00000556029 4242 ntTSL 1 (best) BASIC12.99□□□□□ -0.334e-10■■□□□ 13.1
UPF1Q92900 EBP-201ENST00000276096 904 ntTSL 224.97■■□□□ 1.592e-9■■□□□ 13.1
UPF1Q92900 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.452e-9■■□□□ 13.1
UPF1Q92900 ATP7B-214ENST00000634810 5825 ntTSL 1 (best)14.37□□□□□ -0.112e-7■■□□□ 13.1
UPF1Q92900 ATP7B-202ENST00000344297 5861 ntTSL 5 BASIC13.95□□□□□ -0.182e-7■■□□□ 13.1
UPF1Q92900 ATP7B-203ENST00000400366 6304 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.392e-7■■□□□ 13.1
UPF1Q92900 ATP7B-201ENST00000242839 6638 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.632e-7■■□□□ 13.1
UPF1Q92900 ATP7B-206ENST00000448424 6404 ntAPPRIS ALT2 TSL 1 (best) BASIC9.36□□□□□ -0.912e-7■■□□□ 13.1
UPF1Q92900 COA1-202ENST00000310564 1085 ntAPPRIS P3 TSL 2 BASIC15.81■□□□□ 0.124e-8■■□□□ 13.1
UPF1Q92900 COA1-218ENST00000488813 1641 ntTSL 212.01□□□□□ -0.494e-8■■□□□ 13.1
UPF1Q92900 COA1-204ENST00000415076 1737 ntTSL 311.91□□□□□ -0.54e-8■■□□□ 13.1
UPF1Q92900 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC11.67□□□□□ -0.544e-8■■□□□ 13.1
UPF1Q92900 COA1-210ENST00000446330 1520 ntTSL 210.61□□□□□ -0.714e-8■■□□□ 13.1
UPF1Q92900 COA1-219ENST00000490251 2135 ntTSL 210.55□□□□□ -0.724e-8■■□□□ 13.1
UPF1Q92900 COA1-209ENST00000438444 3223 ntTSL 210.41□□□□□ -0.744e-8■■□□□ 13.1
UPF1Q92900 COA1-211ENST00000446564 1177 ntTSL 29.21□□□□□ -0.944e-8■■□□□ 13.1
UPF1Q92900 COA1-203ENST00000395879 2448 ntAPPRIS P3 TSL 1 (best) BASIC8.35□□□□□ -1.074e-8■■□□□ 13.1
UPF1Q92900 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC21.68■■□□□ 1.069e-7■■□□□ 13
UPF1Q92900 CYP4F3-205ENST00000588886 375 ntTSL 219.31■□□□□ 0.683e-11■■□□□ 13
UPF1Q92900 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.323e-11■■□□□ 13
UPF1Q92900 MAD2L1-202ENST00000333047 1277 ntTSL 1 (best)22.13■■□□□ 1.131e-12■■□□□ 13
UPF1Q92900 PSMD3-202ENST00000415039 1598 ntTSL 223.95■■□□□ 1.426e-11■■□□□ 13
UPF1Q92900 MAK16-201ENST00000360128 3991 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.475e-7■■□□□ 13
UPF1Q92900 IST1-219ENST00000541571 1962 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.013e-9■■□□□ 13
UPF1Q92900 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC32.1■■■□□ 2.731e-11■■□□□ 13
UPF1Q92900 SCARA3-201ENST00000301904 3510 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.821e-11■■□□□ 13
UPF1Q92900 SCMH1-211ENST00000456518 1586 ntTSL 2 BASIC12.68□□□□□ -0.382e-7■■□□□ 13
UPF1Q92900 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.343e-10■■□□□ 13
UPF1Q92900 USP7-208ENST00000563961 4533 ntTSL 514.21□□□□□ -0.143e-10■■□□□ 13
UPF1Q92900 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.457e-7■■□□□ 13
UPF1Q92900 RAN-203ENST00000448750 2455 ntTSL 29.44□□□□□ -0.97e-7■■□□□ 13
UPF1Q92900 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC23.12■■□□□ 1.296e-8■■□□□ 13
UPF1Q92900 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC32.82■■■□□ 2.842e-7■■□□□ 13
UPF1Q92900 RNY3P15-201ENST00000516297 97 ntBASIC8.14□□□□□ -1.112e-8■■□□□ 13
UPF1Q92900 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC37.73■■■■□ 3.631e-9■■□□□ 13
UPF1Q92900 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.271e-9■■□□□ 13
UPF1Q92900 GLT8D1-210ENST00000484163 1889 ntTSL 528.42■■■□□ 2.141e-9■■□□□ 13
UPF1Q92900 CENPV-203ENST00000476243 1770 ntTSL 526.76■■□□□ 1.871e-9■■□□□ 13
UPF1Q92900 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC24.08■■□□□ 1.451e-9■■□□□ 13
UPF1Q92900 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.221e-9■■□□□ 13
UPF1Q92900 CENPV-204ENST00000482983 473 ntTSL 312.71□□□□□ -0.371e-9■■□□□ 13
UPF1Q92900 GLT8D1-209ENST00000481643 796 ntTSL 311.89□□□□□ -0.511e-9■■□□□ 13
UPF1Q92900 GLT8D1-202ENST00000394783 1621 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.621e-9■■□□□ 13
UPF1Q92900 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.894e-9■■□□□ 13
UPF1Q92900 CDV3-202ENST00000420115 3621 ntTSL 2 BASIC9.48□□□□□ -0.894e-9■■□□□ 13
UPF1Q92900 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.922e-7■■□□□ 13
UPF1Q92900 MAD2L1BP-201ENST00000372171 1301 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.722e-7■■□□□ 13
UPF1Q92900 MAD2L1BP-202ENST00000451025 1517 ntTSL 2 BASIC19.33■□□□□ 0.682e-7■■□□□ 13
UPF1Q92900 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.81e-27■■□□□ 12.9
UPF1Q92900 TBC1D10B-203ENST00000475650 2484 ntTSL 217.66■□□□□ 0.422e-7■■□□□ 12.9
UPF1Q92900 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.112e-7■■□□□ 12.9
UPF1Q92900 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.012e-6■■□□□ 12.9
Retrieved 100 of 15,879 protein–RNA pairs in 140.3 ms