RNA–Protein interactions for RNA: ENST00000301904.3

SCARA3-201, Transcript of scavenger receptor class A member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCARA3, Length 3,510 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARA3-201ENST00000301904 NISCHQ9Y2I1 1504 aa18.92■□□□□ 0.62
SCARA3-201ENST00000301904 PPARGC1BQ86YN6 1023 aaKnown RBP17.66■□□□□ 0.42
SCARA3-201ENST00000301904 HRCP23327 699 aa17.65■□□□□ 0.42
SCARA3-201ENST00000301904 SHROOM4Q9ULL8 1493 aa17.57■□□□□ 0.4
SCARA3-201ENST00000301904 SUPT5HO00267 1087 aaKnown RBP17.56■□□□□ 0.4
SCARA3-201ENST00000301904 PELP1Q8IZL8 1130 aaKnown RBP17.54■□□□□ 0.4
SCARA3-201ENST00000301904 PCGF6Q9BYE7 350 aa17.52■□□□□ 0.4
SCARA3-201ENST00000301904 MYO15BQ96JP2 1530 aa17.13■□□□□ 0.33
SCARA3-201ENST00000301904 MYT1Q01538 1121 aa17.09■□□□□ 0.33
SCARA3-201ENST00000301904 CHIC1Q5VXU3 224 aa17.01■□□□□ 0.31
SCARA3-201ENST00000301904 LOC105371045A0A1W2PR82 267 aa16.91■□□□□ 0.3
SCARA3-201ENST00000301904 SCAF1Q9H7N4 1312 aaKnown RBP16.9■□□□□ 0.3
SCARA3-201ENST00000301904 TRIM26Q12899 539 aaPredicted RBP16.63■□□□□ 0.25
SCARA3-201ENST00000301904 DCAF8L2P0C7V8 631 aa16.6■□□□□ 0.25
SCARA3-201ENST00000301904 EHMT2Q96KQ7 1210 aa16.55■□□□□ 0.24
SCARA3-201ENST00000301904 DCAF1Q9Y4B6 1507 aa16.47■□□□□ 0.23
SCARA3-201ENST00000301904 NEUROD1Q13562 356 aa16.44■□□□□ 0.22
SCARA3-201ENST00000301904 ZEB1P37275 1124 aaPredicted RBP16.39■□□□□ 0.21
SCARA3-201ENST00000301904 GTF3C3Q9Y5Q9 886 aa16.38■□□□□ 0.21
SCARA3-201ENST00000301904 FAM9AQ8IZU1 332 aaPredicted RBP16.36■□□□□ 0.21
SCARA3-201ENST00000301904 ACIN1Q9UKV3 1341 aaKnown RBP16.36■□□□□ 0.21
SCARA3-201ENST00000301904 CCDC180Q9P1Z9 1646 aa16.23■□□□□ 0.19
SCARA3-201ENST00000301904 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.22■□□□□ 0.19
SCARA3-201ENST00000301904 YTHDC1Q96MU7 727 aaKnown RBP16.16■□□□□ 0.18
SCARA3-201ENST00000301904 TTBK1Q5TCY1 1321 aaPredicted RBP16.11■□□□□ 0.17
SCARA3-201ENST00000301904 CCER1Q8TC90 406 aaPredicted RBP16.11■□□□□ 0.17
SCARA3-201ENST00000301904 CENPBP07199 599 aaPredicted RBP16.1■□□□□ 0.17
SCARA3-201ENST00000301904 DIEXFQ68CQ4 756 aaKnown RBP16.09■□□□□ 0.17
SCARA3-201ENST00000301904 BCL11AQ9H165 835 aa16.07■□□□□ 0.16
SCARA3-201ENST00000301904 ZCCHC6Q5VYS8 1495 aaKnown RBP16.06■□□□□ 0.16
SCARA3-201ENST00000301904 TRIM41Q8WV44 630 aa16.02■□□□□ 0.16
SCARA3-201ENST00000301904 PRKCSHP14314 528 aaPredicted RBP15.94■□□□□ 0.14
SCARA3-201ENST00000301904 MIER1Q8N108 512 aa15.73■□□□□ 0.11
SCARA3-201ENST00000301904 ERICH6Q7L0X2 663 aa15.7■□□□□ 0.1
SCARA3-201ENST00000301904 ZNF316A6NFI3 1004 aaPredicted RBP15.67■□□□□ 0.1
SCARA3-201ENST00000301904 HNRNPUL2Q1KMD3 747 aaKnown RBP15.5■□□□□ 0.07
SCARA3-201ENST00000301904 SUPT16HQ9Y5B9 1047 aaKnown RBP15.45■□□□□ 0.06
SCARA3-201ENST00000301904 BCANQ96GW7 911 aa15.44■□□□□ 0.06
SCARA3-201ENST00000301904 ANP32EQ9BTT0 268 aa15.44■□□□□ 0.06
SCARA3-201ENST00000301904 CSRNP3Q8WYN3 585 aa15.44■□□□□ 0.06
SCARA3-201ENST00000301904 RSF1Q96T23 1441 aaPredicted RBP15.43■□□□□ 0.06
SCARA3-201ENST00000301904 TSHZ2Q9NRE2 1034 aa15.43■□□□□ 0.06
SCARA3-201ENST00000301904 RB1CC1Q8TDY2 1594 aa15.4■□□□□ 0.06
SCARA3-201ENST00000301904 ABCC9O60706 1549 aa15.38■□□□□ 0.05
SCARA3-201ENST00000301904 UBTFP17480 764 aaKnown RBP15.29■□□□□ 0.04
SCARA3-201ENST00000301904 RANGAP1P46060 587 aaPredicted RBP15.27■□□□□ 0.03
SCARA3-201ENST00000301904 KCNH8Q96L42 1107 aa15.22■□□□□ 0.03
SCARA3-201ENST00000301904 SCRIBQ14160 1630 aa15.18■□□□□ 0.02
SCARA3-201ENST00000301904 CEP162Q5TB80 1403 aa15.17■□□□□ 0.02
SCARA3-201ENST00000301904 ITGAEP38570 1179 aa15.16■□□□□ 0.02
SCARA3-201ENST00000301904 FKBP8Q14318 412 aa15.15■□□□□ 0.02
SCARA3-201ENST00000301904 ANO8Q9HCE9 1232 aaPredicted RBP15.11■□□□□ 0.01
SCARA3-201ENST00000301904 CCDC136Q96JN2 1154 aa15.08■□□□□ 0
SCARA3-201ENST00000301904 CECR2Q9BXF3 1484 aa15.07■□□□□ 0
SCARA3-201ENST00000301904 RBM19Q9Y4C8 960 aaKnown RBP15.06■□□□□ 0
SCARA3-201ENST00000301904 SOGA1O94964 1423 aa15.05■□□□□ -0
SCARA3-201ENST00000301904 WRNQ14191 1432 aaPredicted RBP eCLIP15.02■□□□□ -0
SCARA3-201ENST00000301904 CCDC88BA6NC98 1476 aa15.02□□□□□ -0.01
SCARA3-201ENST00000301904 APLP2Q06481 763 aa15□□□□□ -0.01
SCARA3-201ENST00000301904 ABCC8Q09428 1581 aa14.99□□□□□ -0.01
SCARA3-201ENST00000301904 CLSPNQ9HAW4 1339 aa14.98□□□□□ -0.01
SCARA3-201ENST00000301904 RUSC2Q8N2Y8 1516 aa14.98□□□□□ -0.01
SCARA3-201ENST00000301904 MSH5O43196 834 aa14.97□□□□□ -0.01
SCARA3-201ENST00000301904 EIF5BO60841 1220 aaKnown RBP14.96□□□□□ -0.01
SCARA3-201ENST00000301904 TRIM52Q96A61 297 aa14.96□□□□□ -0.01
SCARA3-201ENST00000301904 MROH2BQ7Z745 1585 aa14.95□□□□□ -0.02
SCARA3-201ENST00000301904 TNIKQ9UKE5 1360 aa14.94□□□□□ -0.02
SCARA3-201ENST00000301904 NEFLP07196 543 aa14.92□□□□□ -0.02
SCARA3-201ENST00000301904 HIRIP3Q9BW71 556 aaPredicted RBP14.92□□□□□ -0.02
SCARA3-201ENST00000301904 IRX6P78412 446 aaPredicted RBP14.91□□□□□ -0.02
SCARA3-201ENST00000301904 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.91□□□□□ -0.02
SCARA3-201ENST00000301904 DDX10Q13206 875 aaKnown RBP14.91□□□□□ -0.02
SCARA3-201ENST00000301904 WIZO95785 1651 aa14.9□□□□□ -0.02
SCARA3-201ENST00000301904 RTN4Q9NQC3 1192 aaKnown RBP14.89□□□□□ -0.03
SCARA3-201ENST00000301904 PABPN1Q86U42 306 aaKnown RBP eCLIP14.86□□□□□ -0.03
SCARA3-201ENST00000301904 DHX57Q6P158 1386 aaKnown RBP14.82□□□□□ -0.04
SCARA3-201ENST00000301904 SALL2Q9Y467 1007 aaPredicted RBP14.8□□□□□ -0.04
SCARA3-201ENST00000301904 CLIP1P30622 1438 aa14.75□□□□□ -0.05
SCARA3-201ENST00000301904 NBR1Q14596 966 aa14.74□□□□□ -0.05
SCARA3-201ENST00000301904 DEKP35659 375 aaKnown RBP14.74□□□□□ -0.05
SCARA3-201ENST00000301904 GOLGA3Q08378 1498 aa14.73□□□□□ -0.05
SCARA3-201ENST00000301904 KANK4Q5T7N3 995 aaPredicted RBP14.72□□□□□ -0.05
SCARA3-201ENST00000301904 SIN3AQ96ST3 1273 aa14.69□□□□□ -0.06
SCARA3-201ENST00000301904 SLC24A1O60721 1099 aa14.69□□□□□ -0.06
SCARA3-201ENST00000301904 CDK11AQ9UQ88 783 aaPredicted RBP14.69□□□□□ -0.06
SCARA3-201ENST00000301904 VPS8Q8N3P4 1428 aa14.64□□□□□ -0.07
SCARA3-201ENST00000301904 EIF4G1Q04637 1599 aaKnown RBP14.62□□□□□ -0.07
SCARA3-201ENST00000301904 ANP32CO43423 234 aa14.62□□□□□ -0.07
SCARA3-201ENST00000301904 HNRNPUQ00839 825 aaKnown RBP eCLIP14.61□□□□□ -0.07
SCARA3-201ENST00000301904 PLEKHG5O94827 1062 aa14.6□□□□□ -0.07
SCARA3-201ENST00000301904 RTL5Q5HYW3 569 aaPredicted RBP14.59□□□□□ -0.07
SCARA3-201ENST00000301904 FANCIQ9NVI1 1328 aa14.57□□□□□ -0.08
SCARA3-201ENST00000301904 B4GALNT3Q6L9W6 998 aa14.56□□□□□ -0.08
SCARA3-201ENST00000301904 BAZ1AQ9NRL2 1556 aaPredicted RBP14.56□□□□□ -0.08
SCARA3-201ENST00000301904 EEA1Q15075 1411 aa14.55□□□□□ -0.08
SCARA3-201ENST00000301904 PAK3O75914 559 aaPredicted RBP14.55□□□□□ -0.08
SCARA3-201ENST00000301904 PPP1R15AO75807 674 aaPredicted RBP14.54□□□□□ -0.08
SCARA3-201ENST00000301904 RAPGEF2Q9Y4G8 1499 aa14.54□□□□□ -0.08
SCARA3-201ENST00000301904 PKNOX2Q96KN3 472 aa14.53□□□□□ -0.08
SCARA3-201ENST00000301904 CEP164Q9UPV0 1460 aa14.52□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms