Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 AC005837.3-201ENST00000612163 286 ntBASIC14.28□□□□□ -0.12
CLRN3Q8NCR9 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLRN3Q8NCR9 AC068587.6-202ENST00000641839 5619 ntBASIC14.28□□□□□ -0.12
CLRN3Q8NCR9 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLRN3Q8NCR9 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLRN3Q8NCR9 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC14.28□□□□□ -0.12
CLRN3Q8NCR9 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLRN3Q8NCR9 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLRN3Q8NCR9 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CLRN3Q8NCR9 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CLRN3Q8NCR9 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC14.27□□□□□ -0.12
CLRN3Q8NCR9 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC14.27□□□□□ -0.12
CLRN3Q8NCR9 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CLRN3Q8NCR9 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLRN3Q8NCR9 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.12
CLRN3Q8NCR9 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CLRN3Q8NCR9 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLRN3Q8NCR9 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
CLRN3Q8NCR9 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CLRN3Q8NCR9 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLRN3Q8NCR9 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CLRN3Q8NCR9 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CLRN3Q8NCR9 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
CLRN3Q8NCR9 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLRN3Q8NCR9 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC14.27□□□□□ -0.12
CLRN3Q8NCR9 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLRN3Q8NCR9 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLRN3Q8NCR9 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLRN3Q8NCR9 EBPL-204ENST00000378272 766 ntTSL 3 BASIC14.27□□□□□ -0.13
CLRN3Q8NCR9 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC14.27□□□□□ -0.13
CLRN3Q8NCR9 AC010141.2-201ENST00000452426 721 ntBASIC14.27□□□□□ -0.13
CLRN3Q8NCR9 SUDS3P1-201ENST00000505831 966 ntBASIC14.27□□□□□ -0.13
CLRN3Q8NCR9 AL136967.2-201ENST00000623968 743 ntBASIC14.27□□□□□ -0.13
CLRN3Q8NCR9 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLRN3Q8NCR9 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
CLRN3Q8NCR9 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
CLRN3Q8NCR9 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC14.27□□□□□ -0.13
CLRN3Q8NCR9 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLRN3Q8NCR9 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLRN3Q8NCR9 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLRN3Q8NCR9 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLRN3Q8NCR9 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLRN3Q8NCR9 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
CLRN3Q8NCR9 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLRN3Q8NCR9 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 AC138035.3-201ENST00000622706 2791 ntBASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN3Q8NCR9 KRT87P-202ENST00000534226 1464 ntBASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 GSN-206ENST00000394353 2311 ntTSL 2 BASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms