RNA–Protein interactions for RNA: ENST00000284770.9

PDLIM3-202, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best) BASIC

Gene PDLIM3, Length 1,766 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-202ENST00000284770 NISCHQ9Y2I1 1504 aa44.03■■■■■ 4.64
PDLIM3-202ENST00000284770 CCDC180Q9P1Z9 1646 aa38.65■■■■□ 3.78
PDLIM3-202ENST00000284770 ABCC9O60706 1549 aa36.99■■■■□ 3.51
PDLIM3-202ENST00000284770 ZCCHC6Q5VYS8 1495 aaKnown RBP36.88■■■■□ 3.49
PDLIM3-202ENST00000284770 DCAF8L2P0C7V8 631 aa36.49■■■■□ 3.43
PDLIM3-202ENST00000284770 DCAF1Q9Y4B6 1507 aa36.45■■■■□ 3.43
PDLIM3-202ENST00000284770 MYO15BQ96JP2 1530 aa36.25■■■■□ 3.39
PDLIM3-202ENST00000284770 NACADO15069 1562 aa36.15■■■■□ 3.38
PDLIM3-202ENST00000284770 RB1CC1Q8TDY2 1594 aa35.95■■■■□ 3.35
PDLIM3-202ENST00000284770 SHROOM4Q9ULL8 1493 aa35.44■■■■□ 3.26
PDLIM3-202ENST00000284770 SCRIBQ14160 1630 aa35.4■■■■□ 3.26
PDLIM3-202ENST00000284770 UNC13AQ9UPW8 1703 aa35.13■■■■□ 3.21
PDLIM3-202ENST00000284770 BICRAQ9NZM4 1560 aa34.85■■■■□ 3.17
PDLIM3-202ENST00000284770 PABPN1Q86U42 306 aaKnown RBP eCLIP34.78■■■■□ 3.16
PDLIM3-202ENST00000284770 CECR2Q9BXF3 1484 aa34.22■■■■□ 3.07
PDLIM3-202ENST00000284770 BAZ1AQ9NRL2 1556 aaPredicted RBP34.05■■■■□ 3.04
PDLIM3-202ENST00000284770 MROH2BQ7Z745 1585 aa33.96■■■■□ 3.03
PDLIM3-202ENST00000284770 RSF1Q96T23 1441 aaPredicted RBP33.94■■■■□ 3.02
PDLIM3-202ENST00000284770 SMARCA4P51532 1647 aa33.94■■■■□ 3.02
PDLIM3-202ENST00000284770 EIF4G1Q04637 1599 aaKnown RBP33.85■■■■□ 3.01
PDLIM3-202ENST00000284770 SUPT5HO00267 1087 aaKnown RBP33.85■■■■□ 3.01
PDLIM3-202ENST00000284770 WIZO95785 1651 aa33.63■■■□□ 2.97
PDLIM3-202ENST00000284770 PEG3Q9GZU2 1588 aa33.59■■■□□ 2.97
PDLIM3-202ENST00000284770 ATAD2BQ9ULI0 1458 aa33.54■■■□□ 2.96
PDLIM3-202ENST00000284770 SMARCA2P51531 1590 aa33.52■■■□□ 2.96
PDLIM3-202ENST00000284770 CC2D2AQ9P2K1 1620 aa33.48■■■□□ 2.95
PDLIM3-202ENST00000284770 NCAPD3P42695 1498 aa33.38■■■□□ 2.93
PDLIM3-202ENST00000284770 TOP2AP11388 1531 aaKnown RBP33.32■■■□□ 2.92
PDLIM3-202ENST00000284770 BAZ1BQ9UIG0 1483 aaKnown RBP33.31■■■□□ 2.92
PDLIM3-202ENST00000284770 HMGXB3Q12766 1538 aa33.27■■■□□ 2.92
PDLIM3-202ENST00000284770 DNAJC5BQ9UF47 199 aa33.14■■■□□ 2.9
PDLIM3-202ENST00000284770 CCDC88BA6NC98 1476 aa32.96■■■□□ 2.87
PDLIM3-202ENST00000284770 CADPSQ9ULU8 1353 aa32.48■■■□□ 2.79
PDLIM3-202ENST00000284770 CFTRP13569 1480 aa32.47■■■□□ 2.79
PDLIM3-202ENST00000284770 LAMC3Q9Y6N6 1575 aa32.31■■■□□ 2.76
PDLIM3-202ENST00000284770 NESP48681 1621 aa32.3■■■□□ 2.76
PDLIM3-202ENST00000284770 PRDM2Q13029 1718 aa32.21■■■□□ 2.75
PDLIM3-202ENST00000284770 CHIC1Q5VXU3 224 aa32.16■■■□□ 2.74
PDLIM3-202ENST00000284770 PDS5BQ9NTI5 1447 aa32.1■■■□□ 2.73
PDLIM3-202ENST00000284770 FANCD2Q9BXW9 1451 aa32.09■■■□□ 2.73
PDLIM3-202ENST00000284770 ABCC8Q09428 1581 aa32.04■■■□□ 2.72
PDLIM3-202ENST00000284770 WRNQ14191 1432 aaPredicted RBP eCLIP31.96■■■□□ 2.71
PDLIM3-202ENST00000284770 CEP164Q9UPV0 1460 aa31.94■■■□□ 2.7
PDLIM3-202ENST00000284770 TRIM41Q8WV44 630 aa31.92■■■□□ 2.7
PDLIM3-202ENST00000284770 KIF21AQ7Z4S6 1674 aa31.89■■■□□ 2.7
PDLIM3-202ENST00000284770 SYNJ1O43426 1573 aa31.81■■■□□ 2.68
PDLIM3-202ENST00000284770 CUX1P39880 1505 aa31.8■■■□□ 2.68
PDLIM3-202ENST00000284770 ERCC6Q03468 1493 aa31.8■■■□□ 2.68
PDLIM3-202ENST00000284770 TOP2BQ02880 1626 aa31.76■■■□□ 2.67
PDLIM3-202ENST00000284770 BIVM-ERCC5R4GMW8 1640 aa31.72■■■□□ 2.67
PDLIM3-202ENST00000284770 URB2Q14146 1524 aaKnown RBP31.7■■■□□ 2.67
PDLIM3-202ENST00000284770 DNMBPQ6XZF7 1577 aa31.7■■■□□ 2.66
PDLIM3-202ENST00000284770 MRC2Q9UBG0 1479 aa31.69■■■□□ 2.66
PDLIM3-202ENST00000284770 TOPBP1Q92547 1522 aa31.67■■■□□ 2.66
PDLIM3-202ENST00000284770 WDR62O43379 1518 aa31.55■■■□□ 2.64
PDLIM3-202ENST00000284770 THOC2Q8NI27 1593 aaKnown RBP31.55■■■□□ 2.64
PDLIM3-202ENST00000284770 FGD5Q6ZNL6 1462 aa31.54■■■□□ 2.64
PDLIM3-202ENST00000284770 POLA1P09884 1462 aaPredicted RBP31.48■■■□□ 2.63
PDLIM3-202ENST00000284770 SOGA1O94964 1423 aa31.38■■■□□ 2.61
PDLIM3-202ENST00000284770 RAD54L2Q9Y4B4 1467 aa31.35■■■□□ 2.61
PDLIM3-202ENST00000284770 CUX2O14529 1486 aa31.31■■■□□ 2.6
PDLIM3-202ENST00000284770 ABCA10Q8WWZ4 1543 aa31.28■■■□□ 2.6
PDLIM3-202ENST00000284770 FAM9AQ8IZU1 332 aaPredicted RBP31.25■■■□□ 2.59
PDLIM3-202ENST00000284770 RUSC2Q8N2Y8 1516 aa31.25■■■□□ 2.59
PDLIM3-202ENST00000284770 EEA1Q15075 1411 aa31.25■■■□□ 2.59
PDLIM3-202ENST00000284770 TARBP1Q13395 1621 aaKnown RBP31.24■■■□□ 2.59
PDLIM3-202ENST00000284770 IFT140Q96RY7 1462 aa31.23■■■□□ 2.59
PDLIM3-202ENST00000284770 KIF27Q86VH2 1401 aa31.22■■■□□ 2.59
PDLIM3-202ENST00000284770 WDR97A6NE52 1622 aa31.18■■■□□ 2.58
PDLIM3-202ENST00000284770 CSRNP3Q8WYN3 585 aa31.12■■■□□ 2.57
PDLIM3-202ENST00000284770 TDRD9Q8NDG6 1382 aaKnown RBP31.11■■■□□ 2.57
PDLIM3-202ENST00000284770 ABCA5Q8WWZ7 1642 aa31.04■■■□□ 2.56
PDLIM3-202ENST00000284770 ZNF608Q9ULD9 1512 aaPredicted RBP31.03■■■□□ 2.56
PDLIM3-202ENST00000284770 GAPVD1Q14C86 1478 aa31.03■■■□□ 2.56
PDLIM3-202ENST00000284770 AQRO60306 1485 aaKnown RBP eCLIP31■■■□□ 2.55
PDLIM3-202ENST00000284770 IGF1RP08069 1367 aa31■■■□□ 2.55
PDLIM3-202ENST00000284770 EIF4G3O43432 1585 aaKnown RBP30.91■■■□□ 2.54
PDLIM3-202ENST00000284770 ERICH3Q5RHP9 1530 aa30.91■■■□□ 2.54
PDLIM3-202ENST00000284770 GRIN2BQ13224 1484 aa30.88■■■□□ 2.53
PDLIM3-202ENST00000284770 LOC105371045A0A1W2PR82 267 aa30.87■■■□□ 2.53
PDLIM3-202ENST00000284770 PRXQ9BXM0 1461 aa30.87■■■□□ 2.53
PDLIM3-202ENST00000284770 PBRM1Q86U86 1689 aa30.84■■■□□ 2.53
PDLIM3-202ENST00000284770 CARMIL1Q5VZK9 1371 aa30.83■■■□□ 2.53
PDLIM3-202ENST00000284770 KIF21BO75037 1637 aa30.83■■■□□ 2.53
PDLIM3-202ENST00000284770 CUL7Q14999 1698 aa30.79■■■□□ 2.52
PDLIM3-202ENST00000284770 EHMT2Q96KQ7 1210 aa30.79■■■□□ 2.52
PDLIM3-202ENST00000284770 GOLGA3Q08378 1498 aa30.75■■■□□ 2.51
PDLIM3-202ENST00000284770 RAPGEF2Q9Y4G8 1499 aa30.75■■■□□ 2.51
PDLIM3-202ENST00000284770 SNAPC4Q5SXM2 1469 aa30.7■■■□□ 2.51
PDLIM3-202ENST00000284770 FHAD1B1AJZ9 1412 aa30.7■■■□□ 2.5
PDLIM3-202ENST00000284770 MAGI1Q96QZ7 1491 aaPredicted RBP30.69■■■□□ 2.5
PDLIM3-202ENST00000284770 ADAMTS12P58397 1594 aa30.67■■■□□ 2.5
PDLIM3-202ENST00000284770 UBTFP17480 764 aaKnown RBP30.64■■■□□ 2.49
PDLIM3-202ENST00000284770 TNIKQ9UKE5 1360 aa30.57■■■□□ 2.48
PDLIM3-202ENST00000284770 SYNJ2O15056 1496 aa30.56■■■□□ 2.48
PDLIM3-202ENST00000284770 CHMP7Q8WUX9 453 aaPredicted RBP30.52■■■□□ 2.48
PDLIM3-202ENST00000284770 GRIN2AQ12879 1464 aa30.49■■■□□ 2.47
PDLIM3-202ENST00000284770 FBLN2P98095 1184 aa30.46■■■□□ 2.47
PDLIM3-202ENST00000284770 CEP162Q5TB80 1403 aa30.34■■■□□ 2.45
PDLIM3-202ENST00000284770 CTTNBP2Q8WZ74 1663 aa30.33■■■□□ 2.45
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms