Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CDH4P55283 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC18.29■□□□□ 0.52
CDH4P55283 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDH4P55283 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.29■□□□□ 0.52
CDH4P55283 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH4P55283 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH4P55283 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CDH4P55283 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC18.28■□□□□ 0.52
CDH4P55283 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH4P55283 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.28■□□□□ 0.52
CDH4P55283 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH4P55283 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CDH4P55283 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC18.28■□□□□ 0.52
CDH4P55283 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC18.28■□□□□ 0.52
CDH4P55283 TPM1-218ENST00000559281 851 ntTSL 5 BASIC18.28■□□□□ 0.52
CDH4P55283 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
CDH4P55283 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC18.28■□□□□ 0.52
CDH4P55283 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CDH4P55283 LINC01711-201ENST00000598340 967 ntBASIC18.28■□□□□ 0.52
CDH4P55283 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC18.28■□□□□ 0.52
CDH4P55283 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH4P55283 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH4P55283 AL390961.4-201ENST00000623958 2535 ntBASIC18.28■□□□□ 0.52
CDH4P55283 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
CDH4P55283 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC18.28■□□□□ 0.52
CDH4P55283 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.28■□□□□ 0.52
CDH4P55283 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.28■□□□□ 0.52
CDH4P55283 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH4P55283 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CDH4P55283 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH4P55283 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH4P55283 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.28■□□□□ 0.52
CDH4P55283 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.28■□□□□ 0.52
CDH4P55283 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.28■□□□□ 0.52
CDH4P55283 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH4P55283 HCG11-201ENST00000411553 5696 ntBASIC18.27■□□□□ 0.52
CDH4P55283 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH4P55283 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CDH4P55283 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.27■□□□□ 0.52
CDH4P55283 INTS4P1-201ENST00000438455 1935 ntBASIC18.27■□□□□ 0.52
CDH4P55283 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH4P55283 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH4P55283 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CDH4P55283 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CDH4P55283 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC18.27■□□□□ 0.52
CDH4P55283 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC18.27■□□□□ 0.52
CDH4P55283 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC18.27■□□□□ 0.52
CDH4P55283 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH4P55283 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CDH4P55283 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH4P55283 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.27■□□□□ 0.52
CDH4P55283 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CDH4P55283 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH4P55283 FAM220CP-201ENST00000395253 831 ntBASIC18.27■□□□□ 0.52
CDH4P55283 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC18.27■□□□□ 0.52
CDH4P55283 THAP5-204ENST00000438865 868 ntTSL 2 BASIC18.27■□□□□ 0.52
CDH4P55283 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH4P55283 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH4P55283 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC18.27■□□□□ 0.52
CDH4P55283 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC18.27■□□□□ 0.52
CDH4P55283 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC18.27■□□□□ 0.52
CDH4P55283 COX5A-204ENST00000567270 579 ntTSL 3 BASIC18.27■□□□□ 0.52
CDH4P55283 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC18.27■□□□□ 0.52
CDH4P55283 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
CDH4P55283 IGHV3OR16-7-201ENST00000604106 360 ntBASIC18.27■□□□□ 0.52
CDH4P55283 AL591684.3-201ENST00000605187 298 ntBASIC18.27■□□□□ 0.52
CDH4P55283 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH4P55283 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
CDH4P55283 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH4P55283 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.27■□□□□ 0.52
CDH4P55283 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.27■□□□□ 0.52
CDH4P55283 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
CDH4P55283 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CDH4P55283 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CDH4P55283 NEFHP1-201ENST00000412845 2629 ntBASIC18.27■□□□□ 0.51
CDH4P55283 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CDH4P55283 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
CDH4P55283 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.27■□□□□ 0.51
CDH4P55283 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CDH4P55283 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
CDH4P55283 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.51
CDH4P55283 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC18.26■□□□□ 0.51
CDH4P55283 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.26■□□□□ 0.51
CDH4P55283 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH4P55283 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CDH4P55283 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
CDH4P55283 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.26■□□□□ 0.51
CDH4P55283 AC010460.3-201ENST00000511359 1579 ntBASIC18.26■□□□□ 0.51
CDH4P55283 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH4P55283 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.26■□□□□ 0.51
CDH4P55283 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH4P55283 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CDH4P55283 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH4P55283 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
CDH4P55283 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH4P55283 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC18.26■□□□□ 0.51
CDH4P55283 DDX43P3-201ENST00000441064 443 ntBASIC18.26■□□□□ 0.51
CDH4P55283 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH4P55283 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC18.26■□□□□ 0.51
CDH4P55283 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms