RNA–Protein interactions for RNA: ENST00000374943.8

HLA-DQB1-201, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

BASIC

Gene HLA-DQB1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-201ENST00000374943 NISCHQ9Y2I1 1504 aa40.16■■■■■ 4.02
HLA-DQB1-201ENST00000374943 CCDC180Q9P1Z9 1646 aa34.97■■■■□ 3.19
HLA-DQB1-201ENST00000374943 ZCCHC6Q5VYS8 1495 aaKnown RBP33.84■■■■□ 3.01
HLA-DQB1-201ENST00000374943 DCAF1Q9Y4B6 1507 aa33.28■■■□□ 2.92
HLA-DQB1-201ENST00000374943 ABCC9O60706 1549 aa32.87■■■□□ 2.85
HLA-DQB1-201ENST00000374943 SHROOM4Q9ULL8 1493 aa32.85■■■□□ 2.85
HLA-DQB1-201ENST00000374943 DCAF8L2P0C7V8 631 aa32.78■■■□□ 2.84
HLA-DQB1-201ENST00000374943 MYO15BQ96JP2 1530 aa32.74■■■□□ 2.83
HLA-DQB1-201ENST00000374943 NACADO15069 1562 aa32.4■■■□□ 2.78
HLA-DQB1-201ENST00000374943 SCRIBQ14160 1630 aa32.09■■■□□ 2.73
HLA-DQB1-201ENST00000374943 RB1CC1Q8TDY2 1594 aa32.02■■■□□ 2.72
HLA-DQB1-201ENST00000374943 SUPT5HO00267 1087 aaKnown RBP31.76■■■□□ 2.67
HLA-DQB1-201ENST00000374943 UNC13AQ9UPW8 1703 aa31.53■■■□□ 2.64
HLA-DQB1-201ENST00000374943 RSF1Q96T23 1441 aaPredicted RBP31.25■■■□□ 2.59
HLA-DQB1-201ENST00000374943 CECR2Q9BXF3 1484 aa31.12■■■□□ 2.57
HLA-DQB1-201ENST00000374943 BICRAQ9NZM4 1560 aa31.08■■■□□ 2.57
HLA-DQB1-201ENST00000374943 DNAJC5BQ9UF47 199 aa31.04■■■□□ 2.56
HLA-DQB1-201ENST00000374943 MROH2BQ7Z745 1585 aa31.02■■■□□ 2.56
HLA-DQB1-201ENST00000374943 BAZ1AQ9NRL2 1556 aaPredicted RBP31■■■□□ 2.55
HLA-DQB1-201ENST00000374943 SMARCA4P51532 1647 aa30.84■■■□□ 2.53
HLA-DQB1-201ENST00000374943 WIZO95785 1651 aa30.82■■■□□ 2.53
HLA-DQB1-201ENST00000374943 CHIC1Q5VXU3 224 aa30.67■■■□□ 2.5
HLA-DQB1-201ENST00000374943 PABPN1Q86U42 306 aaKnown RBP eCLIP30.66■■■□□ 2.5
HLA-DQB1-201ENST00000374943 TOP2AP11388 1531 aaKnown RBP30.53■■■□□ 2.48
HLA-DQB1-201ENST00000374943 PEG3Q9GZU2 1588 aa30.48■■■□□ 2.47
HLA-DQB1-201ENST00000374943 SMARCA2P51531 1590 aa30.26■■■□□ 2.43
HLA-DQB1-201ENST00000374943 EIF4G1Q04637 1599 aaKnown RBP30.23■■■□□ 2.43
HLA-DQB1-201ENST00000374943 ATAD2BQ9ULI0 1458 aa30.16■■■□□ 2.42
HLA-DQB1-201ENST00000374943 CCDC88BA6NC98 1476 aa30.15■■■□□ 2.42
HLA-DQB1-201ENST00000374943 BAZ1BQ9UIG0 1483 aaKnown RBP30.01■■■□□ 2.39
HLA-DQB1-201ENST00000374943 HMGXB3Q12766 1538 aa29.91■■■□□ 2.38
HLA-DQB1-201ENST00000374943 TRIM41Q8WV44 630 aa29.86■■■□□ 2.37
HLA-DQB1-201ENST00000374943 NCAPD3P42695 1498 aa29.85■■■□□ 2.37
HLA-DQB1-201ENST00000374943 CC2D2AQ9P2K1 1620 aa29.71■■■□□ 2.35
HLA-DQB1-201ENST00000374943 ABCC8Q09428 1581 aa29.65■■■□□ 2.34
HLA-DQB1-201ENST00000374943 LOC105371045A0A1W2PR82 267 aa29.44■■■□□ 2.3
HLA-DQB1-201ENST00000374943 WRNQ14191 1432 aaPredicted RBP eCLIP29.39■■■□□ 2.3
HLA-DQB1-201ENST00000374943 PRDM2Q13029 1718 aa29.37■■■□□ 2.29
HLA-DQB1-201ENST00000374943 SYNJ1O43426 1573 aa29.33■■■□□ 2.29
HLA-DQB1-201ENST00000374943 CFTRP13569 1480 aa29.29■■■□□ 2.28
HLA-DQB1-201ENST00000374943 FAM9AQ8IZU1 332 aaPredicted RBP29.27■■■□□ 2.28
HLA-DQB1-201ENST00000374943 EEA1Q15075 1411 aa29.22■■■□□ 2.27
HLA-DQB1-201ENST00000374943 BIVM-ERCC5R4GMW8 1640 aa29.22■■■□□ 2.27
HLA-DQB1-201ENST00000374943 TOP2BQ02880 1626 aa29.21■■■□□ 2.27
HLA-DQB1-201ENST00000374943 SOGA1O94964 1423 aa29.12■■■□□ 2.25
HLA-DQB1-201ENST00000374943 CADPSQ9ULU8 1353 aa29.07■■■□□ 2.24
HLA-DQB1-201ENST00000374943 RUSC2Q8N2Y8 1516 aa29■■■□□ 2.23
HLA-DQB1-201ENST00000374943 CUX1P39880 1505 aa28.99■■■□□ 2.23
HLA-DQB1-201ENST00000374943 CSRNP3Q8WYN3 585 aa28.91■■■□□ 2.22
HLA-DQB1-201ENST00000374943 KIF21BO75037 1637 aa28.88■■■□□ 2.21
HLA-DQB1-201ENST00000374943 LAMC3Q9Y6N6 1575 aa28.83■■■□□ 2.21
HLA-DQB1-201ENST00000374943 GOLGA3Q08378 1498 aa28.81■■■□□ 2.2
HLA-DQB1-201ENST00000374943 EHMT2Q96KQ7 1210 aa28.79■■■□□ 2.2
HLA-DQB1-201ENST00000374943 CEP164Q9UPV0 1460 aa28.78■■■□□ 2.2
HLA-DQB1-201ENST00000374943 FANCD2Q9BXW9 1451 aa28.77■■■□□ 2.2
HLA-DQB1-201ENST00000374943 TNIKQ9UKE5 1360 aa28.77■■■□□ 2.2
HLA-DQB1-201ENST00000374943 NESP48681 1621 aa28.7■■■□□ 2.18
HLA-DQB1-201ENST00000374943 DNAJC5Q9H3Z4 198 aa28.7■■■□□ 2.18
HLA-DQB1-201ENST00000374943 DNMBPQ6XZF7 1577 aa28.65■■■□□ 2.18
HLA-DQB1-201ENST00000374943 CEP162Q5TB80 1403 aa28.64■■■□□ 2.18
HLA-DQB1-201ENST00000374943 KIF27Q86VH2 1401 aa28.62■■■□□ 2.17
HLA-DQB1-201ENST00000374943 ERICH3Q5RHP9 1530 aa28.61■■■□□ 2.17
HLA-DQB1-201ENST00000374943 FGD5Q6ZNL6 1462 aa28.6■■■□□ 2.17
HLA-DQB1-201ENST00000374943 PRXQ9BXM0 1461 aa28.56■■■□□ 2.16
HLA-DQB1-201ENST00000374943 RAPGEF2Q9Y4G8 1499 aa28.54■■■□□ 2.16
HLA-DQB1-201ENST00000374943 TOPBP1Q92547 1522 aa28.53■■■□□ 2.16
HLA-DQB1-201ENST00000374943 UBTFP17480 764 aaKnown RBP28.51■■■□□ 2.16
HLA-DQB1-201ENST00000374943 PDS5BQ9NTI5 1447 aa28.5■■■□□ 2.15
HLA-DQB1-201ENST00000374943 KIF21AQ7Z4S6 1674 aa28.48■■■□□ 2.15
HLA-DQB1-201ENST00000374943 PCGF6Q9BYE7 350 aa28.48■■■□□ 2.15
HLA-DQB1-201ENST00000374943 TRIM26Q12899 539 aaPredicted RBP28.46■■■□□ 2.15
HLA-DQB1-201ENST00000374943 CUX2O14529 1486 aa28.45■■■□□ 2.15
HLA-DQB1-201ENST00000374943 URB2Q14146 1524 aaKnown RBP28.42■■■□□ 2.14
HLA-DQB1-201ENST00000374943 POLA1P09884 1462 aaPredicted RBP28.41■■■□□ 2.14
HLA-DQB1-201ENST00000374943 ERCC6Q03468 1493 aa28.39■■■□□ 2.13
HLA-DQB1-201ENST00000374943 ABCA10Q8WWZ4 1543 aa28.38■■■□□ 2.13
HLA-DQB1-201ENST00000374943 WDR97A6NE52 1622 aa28.38■■■□□ 2.13
HLA-DQB1-201ENST00000374943 CLIP1P30622 1438 aa28.33■■■□□ 2.13
HLA-DQB1-201ENST00000374943 IGF1RP08069 1367 aa28.3■■■□□ 2.12
HLA-DQB1-201ENST00000374943 RAD54L2Q9Y4B4 1467 aa28.27■■■□□ 2.12
HLA-DQB1-201ENST00000374943 CUL7Q14999 1698 aa28.2■■■□□ 2.1
HLA-DQB1-201ENST00000374943 ABCA5Q8WWZ7 1642 aa28.18■■■□□ 2.1
HLA-DQB1-201ENST00000374943 CARMIL1Q5VZK9 1371 aa28.16■■■□□ 2.1
HLA-DQB1-201ENST00000374943 VPS8Q8N3P4 1428 aa28.16■■■□□ 2.1
HLA-DQB1-201ENST00000374943 MRC2Q9UBG0 1479 aa28.16■■■□□ 2.1
HLA-DQB1-201ENST00000374943 TARBP1Q13395 1621 aaKnown RBP28.14■■■□□ 2.09
HLA-DQB1-201ENST00000374943 ARAP1Q96P48 1450 aa28.05■■■□□ 2.08
HLA-DQB1-201ENST00000374943 HRCP23327 699 aa28.04■■■□□ 2.08
HLA-DQB1-201ENST00000374943 WDR62O43379 1518 aa28.04■■■□□ 2.08
HLA-DQB1-201ENST00000374943 GAPVD1Q14C86 1478 aa28■■■□□ 2.07
HLA-DQB1-201ENST00000374943 THOC2Q8NI27 1593 aaKnown RBP27.99■■■□□ 2.07
HLA-DQB1-201ENST00000374943 PPARGC1BQ86YN6 1023 aaKnown RBP27.98■■■□□ 2.07
HLA-DQB1-201ENST00000374943 CTTNBP2Q8WZ74 1663 aa27.98■■■□□ 2.07
HLA-DQB1-201ENST00000374943 ARHGAP35Q9NRY4 1499 aa27.96■■■□□ 2.07
HLA-DQB1-201ENST00000374943 PBRM1Q86U86 1689 aa27.96■■■□□ 2.07
HLA-DQB1-201ENST00000374943 TDRD9Q8NDG6 1382 aaKnown RBP27.92■■■□□ 2.06
HLA-DQB1-201ENST00000374943 IFT140Q96RY7 1462 aa27.87■■■□□ 2.05
HLA-DQB1-201ENST00000374943 RANGAP1P46060 587 aaPredicted RBP27.87■■■□□ 2.05
HLA-DQB1-201ENST00000374943 EFCAB5A4FU69 1503 aa27.8■■■□□ 2.04
HLA-DQB1-201ENST00000374943 ADAMTS12P58397 1594 aa27.77■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms