Protein–RNA interactions for Protein: Q96DC8

ECHDC3, Enoyl-CoA hydratase domain-containing protein 3, mitochondrial, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3Q96DC8 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC17.92■□□□□ 0.46
ECHDC3Q96DC8 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
ECHDC3Q96DC8 AC010460.3-201ENST00000511359 1579 ntBASIC17.91■□□□□ 0.46
ECHDC3Q96DC8 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.91■□□□□ 0.46
ECHDC3Q96DC8 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
ECHDC3Q96DC8 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
ECHDC3Q96DC8 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
ECHDC3Q96DC8 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
ECHDC3Q96DC8 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.91■□□□□ 0.46
ECHDC3Q96DC8 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.91■□□□□ 0.46
ECHDC3Q96DC8 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ECHDC3Q96DC8 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ECHDC3Q96DC8 AL390961.4-201ENST00000623958 2535 ntBASIC17.91■□□□□ 0.46
ECHDC3Q96DC8 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ECHDC3Q96DC8 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC17.91■□□□□ 0.46
ECHDC3Q96DC8 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC17.91■□□□□ 0.46
ECHDC3Q96DC8 NUS1P2-201ENST00000417358 873 ntBASIC17.91■□□□□ 0.46
ECHDC3Q96DC8 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC17.91■□□□□ 0.46
ECHDC3Q96DC8 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC17.91■□□□□ 0.46
ECHDC3Q96DC8 AC091304.2-201ENST00000564639 760 ntBASIC17.91■□□□□ 0.46
ECHDC3Q96DC8 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC17.91■□□□□ 0.46
ECHDC3Q96DC8 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
ECHDC3Q96DC8 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC17.91■□□□□ 0.46
ECHDC3Q96DC8 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.46
ECHDC3Q96DC8 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ECHDC3Q96DC8 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
ECHDC3Q96DC8 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.91■□□□□ 0.46
ECHDC3Q96DC8 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
ECHDC3Q96DC8 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
ECHDC3Q96DC8 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
ECHDC3Q96DC8 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.91■□□□□ 0.46
ECHDC3Q96DC8 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ECHDC3Q96DC8 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ECHDC3Q96DC8 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ECHDC3Q96DC8 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.91■□□□□ 0.46
ECHDC3Q96DC8 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
ECHDC3Q96DC8 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 UNC93B7-201ENST00000509439 705 ntBASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 MIR5100-201ENST00000579544 119 ntBASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ECHDC3Q96DC8 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
ECHDC3Q96DC8 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.46
ECHDC3Q96DC8 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
ECHDC3Q96DC8 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ECHDC3Q96DC8 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.45
ECHDC3Q96DC8 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
ECHDC3Q96DC8 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC17.89■□□□□ 0.45
ECHDC3Q96DC8 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ECHDC3Q96DC8 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ECHDC3Q96DC8 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
ECHDC3Q96DC8 DDX43P3-201ENST00000441064 443 ntBASIC17.89■□□□□ 0.45
ECHDC3Q96DC8 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC17.89■□□□□ 0.45
ECHDC3Q96DC8 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC17.89■□□□□ 0.45
ECHDC3Q96DC8 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC17.89■□□□□ 0.45
ECHDC3Q96DC8 IFNL4P1-201ENST00000607083 540 ntBASIC17.89■□□□□ 0.45
ECHDC3Q96DC8 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
ECHDC3Q96DC8 AC116407.2-201ENST00000613639 860 ntBASIC17.89■□□□□ 0.45
ECHDC3Q96DC8 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ECHDC3Q96DC8 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ECHDC3Q96DC8 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ECHDC3Q96DC8 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ECHDC3Q96DC8 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ECHDC3Q96DC8 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ECHDC3Q96DC8 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
ECHDC3Q96DC8 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
ECHDC3Q96DC8 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ECHDC3Q96DC8 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ECHDC3Q96DC8 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms