Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 AC027601.4-201ENST00000611259 610 ntBASIC27.8■■■□□ 2.04
PCF11O94913 AL049757.1-201ENST00000616842 1596 ntBASIC27.8■■■□□ 2.04
PCF11O94913 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
PCF11O94913 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
PCF11O94913 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC27.8■■■□□ 2.04
PCF11O94913 AC018445.3-201ENST00000624177 1945 ntBASIC27.8■■■□□ 2.04
PCF11O94913 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
PCF11O94913 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
PCF11O94913 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC27.79■■■□□ 2.04
PCF11O94913 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC27.79■■■□□ 2.04
PCF11O94913 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC27.79■■■□□ 2.04
PCF11O94913 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
PCF11O94913 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC27.79■■■□□ 2.04
PCF11O94913 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
PCF11O94913 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
PCF11O94913 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
PCF11O94913 WBP2-203ENST00000433525 928 ntTSL 2 BASIC27.79■■■□□ 2.04
PCF11O94913 DDX43P3-201ENST00000441064 443 ntBASIC27.79■■■□□ 2.04
PCF11O94913 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC27.79■■■□□ 2.04
PCF11O94913 DHDH-204ENST00000523250 634 ntTSL 5 BASIC27.79■■■□□ 2.04
PCF11O94913 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
PCF11O94913 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC27.79■■■□□ 2.04
PCF11O94913 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC27.79■■■□□ 2.04
PCF11O94913 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC27.79■■■□□ 2.04
PCF11O94913 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
PCF11O94913 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
PCF11O94913 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC27.79■■■□□ 2.04
PCF11O94913 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
PCF11O94913 NCF1C-201ENST00000438382 1427 ntBASIC27.78■■■□□ 2.04
PCF11O94913 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC27.78■■■□□ 2.04
PCF11O94913 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
PCF11O94913 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC27.78■■■□□ 2.04
PCF11O94913 AC136632.2-201ENST00000512891 861 ntBASIC27.78■■■□□ 2.04
PCF11O94913 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
PCF11O94913 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
PCF11O94913 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC27.78■■■□□ 2.04
PCF11O94913 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC27.78■■■□□ 2.04
PCF11O94913 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC27.78■■■□□ 2.04
PCF11O94913 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC27.78■■■□□ 2.04
PCF11O94913 INIP-202ENST00000374236 874 ntTSL 2 BASIC27.77■■■□□ 2.04
PCF11O94913 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC27.77■■■□□ 2.04
PCF11O94913 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
PCF11O94913 AC108073.2-201ENST00000464002 357 ntBASIC27.77■■■□□ 2.04
PCF11O94913 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC27.77■■■□□ 2.04
PCF11O94913 TMED1-207ENST00000591695 809 ntTSL 5 BASIC27.77■■■□□ 2.04
PCF11O94913 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC27.77■■■□□ 2.04
PCF11O94913 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
PCF11O94913 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
PCF11O94913 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
PCF11O94913 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
PCF11O94913 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
PCF11O94913 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
PCF11O94913 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
PCF11O94913 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC27.77■■■□□ 2.04
PCF11O94913 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC27.77■■■□□ 2.04
PCF11O94913 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC27.77■■■□□ 2.04
PCF11O94913 FIS1-203ENST00000442303 631 ntTSL 3 BASIC27.77■■■□□ 2.04
PCF11O94913 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC27.77■■■□□ 2.04
PCF11O94913 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC27.77■■■□□ 2.04
PCF11O94913 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC27.77■■■□□ 2.04
PCF11O94913 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC27.77■■■□□ 2.04
PCF11O94913 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC27.77■■■□□ 2.04
PCF11O94913 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC27.77■■■□□ 2.04
PCF11O94913 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC27.77■■■□□ 2.04
PCF11O94913 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC27.76■■■□□ 2.03
PCF11O94913 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC27.76■■■□□ 2.03
PCF11O94913 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
PCF11O94913 COX5BP2-201ENST00000392354 334 ntBASIC27.76■■■□□ 2.03
PCF11O94913 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC27.76■■■□□ 2.03
PCF11O94913 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC27.76■■■□□ 2.03
PCF11O94913 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC27.76■■■□□ 2.03
PCF11O94913 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC27.76■■■□□ 2.03
PCF11O94913 RFPL4AP1-201ENST00000530883 850 ntBASIC27.76■■■□□ 2.03
PCF11O94913 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC27.76■■■□□ 2.03
PCF11O94913 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC27.76■■■□□ 2.03
PCF11O94913 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC27.76■■■□□ 2.03
PCF11O94913 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC27.76■■■□□ 2.03
PCF11O94913 MADD-208ENST00000405573 1823 ntTSL 5 BASIC27.76■■■□□ 2.03
PCF11O94913 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC27.76■■■□□ 2.03
PCF11O94913 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC27.76■■■□□ 2.03
PCF11O94913 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC27.76■■■□□ 2.03
PCF11O94913 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC27.76■■■□□ 2.03
PCF11O94913 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
PCF11O94913 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
PCF11O94913 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC27.75■■■□□ 2.03
PCF11O94913 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC27.75■■■□□ 2.03
PCF11O94913 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
PCF11O94913 AC003669.1-201ENST00000334569 611 ntBASIC27.75■■■□□ 2.03
PCF11O94913 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
PCF11O94913 YBX2P1-201ENST00000394192 760 ntBASIC27.75■■■□□ 2.03
PCF11O94913 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC27.75■■■□□ 2.03
PCF11O94913 AC079781.4-201ENST00000641908 219 ntBASIC27.75■■■□□ 2.03
PCF11O94913 PC-208ENST00000529047 1607 ntTSL 3 BASIC27.75■■■□□ 2.03
PCF11O94913 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
PCF11O94913 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
PCF11O94913 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC27.75■■■□□ 2.03
PCF11O94913 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC27.75■■■□□ 2.03
PCF11O94913 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC27.75■■■□□ 2.03
PCF11O94913 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC27.74■■■□□ 2.03
PCF11O94913 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms