Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLPTM1O96005 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLPTM1O96005 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CLPTM1O96005 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CLPTM1O96005 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17■□□□□ 0.31
CLPTM1O96005 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
CLPTM1O96005 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLPTM1O96005 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
CLPTM1O96005 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLPTM1O96005 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLPTM1O96005 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC17■□□□□ 0.31
CLPTM1O96005 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLPTM1O96005 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLPTM1O96005 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC17■□□□□ 0.31
CLPTM1O96005 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLPTM1O96005 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLPTM1O96005 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLPTM1O96005 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
CLPTM1O96005 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC17■□□□□ 0.31
CLPTM1O96005 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC17■□□□□ 0.31
CLPTM1O96005 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC17■□□□□ 0.31
CLPTM1O96005 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC17■□□□□ 0.31
CLPTM1O96005 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC17■□□□□ 0.31
CLPTM1O96005 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17■□□□□ 0.31
CLPTM1O96005 GCSHP5-201ENST00000443090 522 ntBASIC17■□□□□ 0.31
CLPTM1O96005 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC17■□□□□ 0.31
CLPTM1O96005 RPPH1-201ENST00000516869 333 ntBASIC17■□□□□ 0.31
CLPTM1O96005 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC17■□□□□ 0.31
CLPTM1O96005 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC17■□□□□ 0.31
CLPTM1O96005 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
CLPTM1O96005 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
CLPTM1O96005 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC17■□□□□ 0.31
CLPTM1O96005 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC17■□□□□ 0.31
CLPTM1O96005 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC17■□□□□ 0.31
CLPTM1O96005 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLPTM1O96005 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17■□□□□ 0.31
CLPTM1O96005 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
CLPTM1O96005 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLPTM1O96005 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLPTM1O96005 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLPTM1O96005 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
CLPTM1O96005 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLPTM1O96005 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLPTM1O96005 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CLPTM1O96005 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC16.99■□□□□ 0.31
CLPTM1O96005 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
CLPTM1O96005 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLPTM1O96005 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CLPTM1O96005 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
CLPTM1O96005 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
CLPTM1O96005 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.99■□□□□ 0.31
CLPTM1O96005 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC16.99■□□□□ 0.31
CLPTM1O96005 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLPTM1O96005 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLPTM1O96005 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CLPTM1O96005 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLPTM1O96005 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC16.99■□□□□ 0.31
CLPTM1O96005 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC16.99■□□□□ 0.31
CLPTM1O96005 CALM3-202ENST00000391918 702 ntTSL 2 BASIC16.99■□□□□ 0.31
CLPTM1O96005 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
CLPTM1O96005 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC16.99■□□□□ 0.31
CLPTM1O96005 NME1-207ENST00000480143 964 ntTSL 2 BASIC16.99■□□□□ 0.31
CLPTM1O96005 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC16.99■□□□□ 0.31
CLPTM1O96005 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC16.99■□□□□ 0.31
CLPTM1O96005 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLPTM1O96005 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC16.99■□□□□ 0.31
CLPTM1O96005 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC16.99■□□□□ 0.31
CLPTM1O96005 MNT-208ENST00000575394 606 ntTSL 4 BASIC16.99■□□□□ 0.31
CLPTM1O96005 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLPTM1O96005 AL121829.2-201ENST00000620908 328 ntBASIC16.99■□□□□ 0.31
CLPTM1O96005 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLPTM1O96005 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLPTM1O96005 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CLPTM1O96005 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.99■□□□□ 0.31
CLPTM1O96005 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLPTM1O96005 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.99■□□□□ 0.31
CLPTM1O96005 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC16.99■□□□□ 0.31
CLPTM1O96005 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.99■□□□□ 0.31
CLPTM1O96005 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLPTM1O96005 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CLPTM1O96005 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC16.99■□□□□ 0.31
CLPTM1O96005 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLPTM1O96005 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC16.98■□□□□ 0.31
CLPTM1O96005 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.98■□□□□ 0.31
CLPTM1O96005 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLPTM1O96005 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLPTM1O96005 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLPTM1O96005 LINC02199-201ENST00000506655 2702 ntBASIC16.98■□□□□ 0.31
CLPTM1O96005 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.98■□□□□ 0.31
CLPTM1O96005 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CLPTM1O96005 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CLPTM1O96005 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLPTM1O96005 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLPTM1O96005 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLPTM1O96005 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC16.98■□□□□ 0.31
CLPTM1O96005 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
CLPTM1O96005 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLPTM1O96005 PEX7-202ENST00000367756 680 ntTSL 3 BASIC16.98■□□□□ 0.31
CLPTM1O96005 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLPTM1O96005 LY6E-205ENST00000519611 635 ntTSL 3 BASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms