Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.33■□□□□ 0.37
SLC28A1O00337 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SLC28A1O00337 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.33■□□□□ 0.36
SLC28A1O00337 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
SLC28A1O00337 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SLC28A1O00337 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC17.33■□□□□ 0.36
SLC28A1O00337 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.33■□□□□ 0.36
SLC28A1O00337 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC17.33■□□□□ 0.36
SLC28A1O00337 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC17.33■□□□□ 0.36
SLC28A1O00337 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SLC28A1O00337 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.33■□□□□ 0.36
SLC28A1O00337 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
SLC28A1O00337 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.33■□□□□ 0.36
SLC28A1O00337 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SLC28A1O00337 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SLC28A1O00337 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
SLC28A1O00337 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.33■□□□□ 0.36
SLC28A1O00337 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.33■□□□□ 0.36
SLC28A1O00337 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SLC28A1O00337 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
SLC28A1O00337 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SLC28A1O00337 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SLC28A1O00337 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SLC28A1O00337 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SLC28A1O00337 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SLC28A1O00337 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
SLC28A1O00337 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SLC28A1O00337 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SLC28A1O00337 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SLC28A1O00337 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SLC28A1O00337 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SLC28A1O00337 LINC00167-201ENST00000530583 1419 ntBASIC17.32■□□□□ 0.36
SLC28A1O00337 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SLC28A1O00337 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.32■□□□□ 0.36
SLC28A1O00337 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SLC28A1O00337 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
SLC28A1O00337 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SLC28A1O00337 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SLC28A1O00337 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.32■□□□□ 0.36
SLC28A1O00337 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SLC28A1O00337 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC17.32■□□□□ 0.36
SLC28A1O00337 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC17.32■□□□□ 0.36
SLC28A1O00337 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
SLC28A1O00337 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.32■□□□□ 0.36
SLC28A1O00337 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SLC28A1O00337 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.32■□□□□ 0.36
SLC28A1O00337 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
SLC28A1O00337 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SLC28A1O00337 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SLC28A1O00337 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.32■□□□□ 0.36
SLC28A1O00337 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SLC28A1O00337 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SLC28A1O00337 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
SLC28A1O00337 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SLC28A1O00337 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SLC28A1O00337 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.31■□□□□ 0.36
SLC28A1O00337 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
SLC28A1O00337 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.31■□□□□ 0.36
SLC28A1O00337 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
SLC28A1O00337 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SLC28A1O00337 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SLC28A1O00337 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SLC28A1O00337 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
SLC28A1O00337 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SLC28A1O00337 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SLC28A1O00337 ECEL1P3-201ENST00000427961 737 ntBASIC17.31■□□□□ 0.36
SLC28A1O00337 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.31■□□□□ 0.36
SLC28A1O00337 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.31■□□□□ 0.36
SLC28A1O00337 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
SLC28A1O00337 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC17.31■□□□□ 0.36
SLC28A1O00337 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.31■□□□□ 0.36
SLC28A1O00337 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC17.31■□□□□ 0.36
SLC28A1O00337 AC116407.2-201ENST00000613639 860 ntBASIC17.31■□□□□ 0.36
SLC28A1O00337 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.31■□□□□ 0.36
SLC28A1O00337 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SLC28A1O00337 AL157888.1-201ENST00000631930 593 ntBASIC17.31■□□□□ 0.36
SLC28A1O00337 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.31■□□□□ 0.36
SLC28A1O00337 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SLC28A1O00337 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SLC28A1O00337 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SLC28A1O00337 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SLC28A1O00337 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.31■□□□□ 0.36
SLC28A1O00337 AC100803.2-201ENST00000562459 1963 ntBASIC17.31■□□□□ 0.36
SLC28A1O00337 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.31■□□□□ 0.36
SLC28A1O00337 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SLC28A1O00337 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SLC28A1O00337 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SLC28A1O00337 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
SLC28A1O00337 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
SLC28A1O00337 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SLC28A1O00337 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
SLC28A1O00337 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SLC28A1O00337 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SLC28A1O00337 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.3■□□□□ 0.36
SLC28A1O00337 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
SLC28A1O00337 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.3■□□□□ 0.36
SLC28A1O00337 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
SLC28A1O00337 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.3■□□□□ 0.36
SLC28A1O00337 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SLC28A1O00337 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms