Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 TSPY19P-201ENST00000418461 509 ntBASIC20.28■□□□□ 0.84
CIITAP33076 TSPY18P-201ENST00000441642 509 ntBASIC20.28■□□□□ 0.84
CIITAP33076 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC20.28■□□□□ 0.84
CIITAP33076 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC20.28■□□□□ 0.84
CIITAP33076 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC20.28■□□□□ 0.84
CIITAP33076 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC20.28■□□□□ 0.84
CIITAP33076 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
CIITAP33076 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
CIITAP33076 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC20.28■□□□□ 0.84
CIITAP33076 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC20.28■□□□□ 0.84
CIITAP33076 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CIITAP33076 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CIITAP33076 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
CIITAP33076 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CIITAP33076 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CIITAP33076 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
CIITAP33076 KRT18P55-202ENST00000578578 1546 ntBASIC20.27■□□□□ 0.84
CIITAP33076 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CIITAP33076 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC20.27■□□□□ 0.84
CIITAP33076 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CIITAP33076 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CIITAP33076 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
CIITAP33076 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CIITAP33076 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CIITAP33076 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CIITAP33076 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC20.27■□□□□ 0.84
CIITAP33076 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CIITAP33076 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC20.27■□□□□ 0.84
CIITAP33076 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CIITAP33076 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CIITAP33076 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC20.27■□□□□ 0.84
CIITAP33076 DANCR-204ENST00000444958 709 ntTSL 3 BASIC20.27■□□□□ 0.84
CIITAP33076 AC009533.2-201ENST00000543664 586 ntBASIC20.27■□□□□ 0.84
CIITAP33076 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
CIITAP33076 FICD-205ENST00000552758 603 ntTSL 2 BASIC20.27■□□□□ 0.84
CIITAP33076 AC099336.1-202ENST00000602961 463 ntBASIC20.27■□□□□ 0.84
CIITAP33076 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CIITAP33076 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.27■□□□□ 0.84
CIITAP33076 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CIITAP33076 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC20.27■□□□□ 0.84
CIITAP33076 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC20.27■□□□□ 0.84
CIITAP33076 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CIITAP33076 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CIITAP33076 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CIITAP33076 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CIITAP33076 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CIITAP33076 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CIITAP33076 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CIITAP33076 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CIITAP33076 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CIITAP33076 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CIITAP33076 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC20.26■□□□□ 0.83
CIITAP33076 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC20.26■□□□□ 0.83
CIITAP33076 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CIITAP33076 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.26■□□□□ 0.83
CIITAP33076 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CIITAP33076 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CIITAP33076 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CIITAP33076 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CIITAP33076 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CIITAP33076 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CIITAP33076 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC20.26■□□□□ 0.83
CIITAP33076 MINOS1P3-201ENST00000457048 203 ntBASIC20.26■□□□□ 0.83
CIITAP33076 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC20.26■□□□□ 0.83
CIITAP33076 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC20.26■□□□□ 0.83
CIITAP33076 PRELID1P1-202ENST00000567272 903 ntBASIC20.26■□□□□ 0.83
CIITAP33076 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC20.26■□□□□ 0.83
CIITAP33076 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC20.26■□□□□ 0.83
CIITAP33076 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC20.26■□□□□ 0.83
CIITAP33076 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CIITAP33076 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CIITAP33076 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
CIITAP33076 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CIITAP33076 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CIITAP33076 AC100803.2-201ENST00000562459 1963 ntBASIC20.26■□□□□ 0.83
CIITAP33076 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CIITAP33076 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC20.26■□□□□ 0.83
CIITAP33076 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC20.26■□□□□ 0.83
CIITAP33076 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CIITAP33076 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC20.25■□□□□ 0.83
CIITAP33076 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CIITAP33076 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CIITAP33076 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC20.25■□□□□ 0.83
CIITAP33076 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC20.25■□□□□ 0.83
CIITAP33076 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
CIITAP33076 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CIITAP33076 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.25■□□□□ 0.83
CIITAP33076 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CIITAP33076 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC20.25■□□□□ 0.83
CIITAP33076 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
CIITAP33076 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC20.25■□□□□ 0.83
CIITAP33076 FOSL1P1-201ENST00000511041 816 ntBASIC20.25■□□□□ 0.83
CIITAP33076 SDHD-206ENST00000528182 754 ntTSL 3 BASIC20.25■□□□□ 0.83
CIITAP33076 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC20.25■□□□□ 0.83
CIITAP33076 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CIITAP33076 AC011467.2-201ENST00000598425 242 ntBASIC20.25■□□□□ 0.83
CIITAP33076 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CIITAP33076 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CIITAP33076 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC20.25■□□□□ 0.83
CIITAP33076 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms